Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1031 ATGGAGGGTCCGGAGTTGGAAGAGAATAAGAATTCTGAAGTGCATTTGACTTCTGCTGCAGCCTTTGTGGAGGGTGGAATCCAGGATGCTTGTGATGATGCTTGTAGTATATGTCTTGAAGCATTTCATGACAGTGATCCTTCAACAGTGACAAGTTGCAAACATGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAAAGAAGCTCTCAATGCCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCAACAAGTCAGGAATTACTTGAAGCGGTGGAAAGAGAGAGAAACATTAGGTTGAATCCACCTAGAAATGCCACAATATTTCATCATCCTGCTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATTATACAGCACTTAGCTGCTGCTGCAGCAATGGGACGAGCACGCCATATTGCTAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTATTTTCAACCCATCCTAATTCACCTCCCATGGCTCCTGCCTCTCCAACTCATGGGGCAAATGGTGAACCGGCTTCAGCAATCACTGTTGCTACTCTATCTCCAACTCCTGCTGCTGGAGAAGAATCATCACAGTCAACTTCTGTTCCTCTTGTTCAAGCAGATCATGTTTCTGGTTCAGGATCAGGATCTGTTCTTGCTGCTGATAGCCAAGGATCATCATACAACATTAGGAGATCTCCGAGCCAGTCTTCTCCAAGCAGTCAGGACAGAGCAGGGCCATCAGAATTCCAATCATTTTCAGAATCTTTGAAGTCTAGACTAAATGCAGTTTCAACGAGATACAAAGAGTCGATATCCAGGAGCACCAGAGGTTGGAAGGAGAGATGGTTCTCTCGCAACAGCTCTATGCCTGATGTGGGATCTGAAGGAAGACAAGAGGTTAATTCAGGTATTGCAACTGTGTCACGCATGATGGAACGACTAGATACCAGAGACAACAGTAGAAATGATAGCAATCCTGCTCAAAGTCATTTAGAAGGTGCTTCGGTTGCTGGAGCAAATGACCAACATATTTCAGATGCCGAAGGTGAAAGTCCCTTGAGAGATAATAACACAAAAACATCCTTTGCTGCTGCTTTTGTGTGGCTGAAAGGTAGAAATAGGATTGTCCATTGCTGGATATGA 1200 0.4458 MEGPELEENKNSEVHLTSAAAFVEGGIQDACDDACSICLEAFHDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNIRLNPPRNATIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASPTHGANGEPASAITVATLSPTPAAGEESSQSTSVPLVQADHVSGSGSGSVLAADSQGSSYNIRRSPSQSSPSSQDRAGPSEFQSFSESLKSRLNAVSTRYKESISRSTRGWKERWFSRNSSMPDVGSEGRQEVNSGIATVSRMMERLDTRDNSRNDSNPAQSHLEGASVAGANDQHISDAEGESPLRDNNTKTSFAAAFVWLKGRNRIVHCWI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1031 399 MobiDBLite consensus disorder prediction 225 272 - -
Lele11g1031 399 Pfam Ring finger domain 34 75 IPR001841 -
Lele11g1031 399 MobiDBLite consensus disorder prediction 336 358 - -
Lele11g1031 399 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Lele11g1031 399 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 84 - -
Lele11g1031 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 84 IPR013083 -
Lele11g1031 399 SUPERFAMILY RING/U-box 28 83 - -
Lele11g1031 399 MobiDBLite consensus disorder prediction 151 195 - -
Lele11g1031 399 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Lele11g1031 399 SMART ring_2 35 75 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1031 Lele-ChrLele11 17489309 17493315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1031 32 83 C3H Transcription Factor Family AT4G00335 44.231 1.50e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1027 09 19456402 19462467 Lele11g1031 11 17489309 17493315 hybridization
Lele10g0980 10 21103245 21107061 Lele11g1031 11 17489309 17493315 hybridization