LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g1025	ATGAACTGGAGTAGAGGCAGCATCCTCGGCCATGGCTCGTCTGCCACCGTCTCTTTGGCTGCATCTGAACAGTGCGGCGAAGCGTTCTTCGCCGTCAAGTCATCAGATCTTTCGGTTTCAGGATTGTTACAGAGAGAGCAGAGGATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGGAGTGACATCACGAGGGAGAACAACAAGGTCTTGTACAATCTTTTCATGGAGTATATGCCTCTCGGAACGCTTACTCAAGCGACTCGCCTGCAGGGTAGCCGACTCAATGAGCCGATGATCGCATCCTACATTCGGCAAGTTTTGCAGGGGCTGGAGTATATACATTCAAATGGGTTCGTACATTGTGACATTAAGGGTGCCAATATCTTAATTGGAGAAGATGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCGTGCCACGGTTGCCGCGGCGCCGATAAGTGGGACGCCGATGTTTATGGCTCCGGAGGTGGCTCGGGGGGAAGAACAGGGGTATCCTTGTGACATATGGGCACTTGGGTGCACAGTAATTGAAGTGGCTTCAGGGGTTTCACCATGGCCTAATGTAGGAGATCCTGTTTCGATTCTTTACCGGATAGCATATTCCGGCGAGGTGCCGGAGATTCCGGGTTTCCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCGAAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTGTTGGGGAATTGAATTCCAATTCGAAGCAGCAGCAAATCAACGAATCTAATTCAATCTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAGTGGAAGAATCATCATCATCAACATCAGAGAGCGTAAGCAATCTTCTTCTCCATAACCATACAAGTTTCGAAAATTCGCCAGCTGCTAGAATCAAACGGTTAGCTGTAAGTTCAGGGAAACCCAATTGGATACAAGACGAGAATTGGATCACAACGATAGGGAACGAAGAAGGATCCGAAGAATCAACCAGCAAAAATTTGAAAGAGTCAGAGGAAAGAAATGTCATTAGTAGTAGAATTAGTGATTATTTTTGGGATAATTACGAATGTAGTGAAGTTAGTATTAGAACAAGTAGTATCATTCATCATCATCATCAAGTATCAATTTTTTTATAA	1191	0.45	MNWSRGSILGHGSSATVSLAASEQCGEAFFAVKSSDLSVSGLLQREQRILSSLSSPYIVSYKGSDITRENNKVLYNLFMEYMPLGTLTQATRLQGSRLNEPMIASYIRQVLQGLEYIHSNGFVHCDIKGANILIGEDGAKIADFGCAKRATVAAAPISGTPMFMAPEVARGEEQGYPCDIWALGCTVIEVASGVSPWPNVGDPVSILYRIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFVGELNSNSKQQQINESNSISPTSILEQGFWSSVEESSSSTSESVSNLLLHNHTSFENSPAARIKRLAVSSGKPNWIQDENWITTIGNEEGSEESTSKNLKESEERNVISSRISDYFWDNYECSEVSIRTSSIIHHHHQVSIFL	396

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele11g1025	396	Pfam	Protein kinase domain	5	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele11g1025	396	Gene3D	Transferase(Phosphotransferase) domain 1	2	364	-	-
Lele11g1025	396	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	3	304	-	-
Lele11g1025	396	SMART	serkin_6	3	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele11g1025	396	ProSiteProfiles	Protein kinase domain profile.	3	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele11g1025	396	SUPERFAMILY	Protein kinase-like (PK-like)	2	304	IPR011009	-
Lele11g1025	396	CDD	STKc_MAPKKK	2	254	-	-
Lele11g1025	396	ProSitePatterns	Protein kinases ATP-binding region signature.	9	33	IPR017441	GO:0005524
Lele11g1025	396	FunFam	Mitogen-activated protein kinase kinase kinase 17	2	315	-	-
Lele11g1025	396	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	122	134	IPR008271	GO:0004672\|GO:0006468

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g1025	Lele-ChrLele11	17404746	17405936	Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g1025	2	371	MAP Kinase Kinase Kinase	AT5G55090	48.421	9.95e-117	347

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lele11g1025		Pkinase	4.8e-52	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lele29g0421	29	2586889	2590350	Lele11g1025	11	17404746	17405936	CCT
Lele30g0988	30	13377953	13381297	Lele11g1025	11	17404746	17405936	CCT
Lele11g1025	11	17404746	17405936	Lele11g1025	11	17404746	17405936	ECH
Lele09g1018	09	19359576	19360766	Lele11g1025	11	17404746	17405936	hybridization
Lele10g0975	10	21011054	21012256	Lele11g1025	11	17404746	17405936	hybridization

Showing 1 to 5 of 5 entries

Previous1Next