Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1025 ATGAACTGGAGTAGAGGCAGCATCCTCGGCCATGGCTCGTCTGCCACCGTCTCTTTGGCTGCATCTGAACAGTGCGGCGAAGCGTTCTTCGCCGTCAAGTCATCAGATCTTTCGGTTTCAGGATTGTTACAGAGAGAGCAGAGGATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGGAGTGACATCACGAGGGAGAACAACAAGGTCTTGTACAATCTTTTCATGGAGTATATGCCTCTCGGAACGCTTACTCAAGCGACTCGCCTGCAGGGTAGCCGACTCAATGAGCCGATGATCGCATCCTACATTCGGCAAGTTTTGCAGGGGCTGGAGTATATACATTCAAATGGGTTCGTACATTGTGACATTAAGGGTGCCAATATCTTAATTGGAGAAGATGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCGTGCCACGGTTGCCGCGGCGCCGATAAGTGGGACGCCGATGTTTATGGCTCCGGAGGTGGCTCGGGGGGAAGAACAGGGGTATCCTTGTGACATATGGGCACTTGGGTGCACAGTAATTGAAGTGGCTTCAGGGGTTTCACCATGGCCTAATGTAGGAGATCCTGTTTCGATTCTTTACCGGATAGCATATTCCGGCGAGGTGCCGGAGATTCCGGGTTTCCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCGAAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTGTTGGGGAATTGAATTCCAATTCGAAGCAGCAGCAAATCAACGAATCTAATTCAATCTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAGTGGAAGAATCATCATCATCAACATCAGAGAGCGTAAGCAATCTTCTTCTCCATAACCATACAAGTTTCGAAAATTCGCCAGCTGCTAGAATCAAACGGTTAGCTGTAAGTTCAGGGAAACCCAATTGGATACAAGACGAGAATTGGATCACAACGATAGGGAACGAAGAAGGATCCGAAGAATCAACCAGCAAAAATTTGAAAGAGTCAGAGGAAAGAAATGTCATTAGTAGTAGAATTAGTGATTATTTTTGGGATAATTACGAATGTAGTGAAGTTAGTATTAGAACAAGTAGTATCATTCATCATCATCATCAAGTATCAATTTTTTTATAA 1191 0.45 MNWSRGSILGHGSSATVSLAASEQCGEAFFAVKSSDLSVSGLLQREQRILSSLSSPYIVSYKGSDITRENNKVLYNLFMEYMPLGTLTQATRLQGSRLNEPMIASYIRQVLQGLEYIHSNGFVHCDIKGANILIGEDGAKIADFGCAKRATVAAAPISGTPMFMAPEVARGEEQGYPCDIWALGCTVIEVASGVSPWPNVGDPVSILYRIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFVGELNSNSKQQQINESNSISPTSILEQGFWSSVEESSSSTSESVSNLLLHNHTSFENSPAARIKRLAVSSGKPNWIQDENWITTIGNEEGSEESTSKNLKESEERNVISSRISDYFWDNYECSEVSIRTSSIIHHHHQVSIFL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1025 396 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1025 396 Gene3D Transferase(Phosphotransferase) domain 1 2 364 - -
Lele11g1025 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 304 - -
Lele11g1025 396 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1025 396 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele11g1025 396 SUPERFAMILY Protein kinase-like (PK-like) 2 304 IPR011009 -
Lele11g1025 396 CDD STKc_MAPKKK 2 254 - -
Lele11g1025 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Lele11g1025 396 FunFam Mitogen-activated protein kinase kinase kinase 17 2 315 - -
Lele11g1025 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1025 Lele-ChrLele11 17404746 17405936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1025 2 371 MAP Kinase Kinase Kinase AT5G55090 48.421 9.95e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele11g1025 Pkinase 4.8e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0421 29 2586889 2590350 Lele11g1025 11 17404746 17405936 CCT
Lele30g0988 30 13377953 13381297 Lele11g1025 11 17404746 17405936 CCT
Lele11g1025 11 17404746 17405936 Lele11g1025 11 17404746 17405936 ECH
Lele09g1018 09 19359576 19360766 Lele11g1025 11 17404746 17405936 hybridization
Lele10g0975 10 21011054 21012256 Lele11g1025 11 17404746 17405936 hybridization