Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1011 ATGGCCACTTGCCAGGGGGCATCAGATTCTCCACTAAGGCACCTCACTCCCACCACTATTGTATGTCCCCCATTTAAAACCATACTACTACAGCACAAGGCTGGTGAAAATCCTTTCAAGGGGAACTTGACGAGTCTCCCTAAGCCTGGGGGTGGCGAGTTCGGAAAGTTCTACAGCCTTCCTTCGCTGAACGATCCAAGAATTGATAGGTTACCTTATTCTATCAGAATTCTCCTGGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTAAGAAAGAAGATATTGAGAAGATTATTGATTGGGAAAATACTTCTGTTAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTTCTCCTGCAGGATTTTACAGGAGTCCCGGCTGTTGTTGACCTAGCTTGTATGCGTGATGCTATGAATAAGCTTGGCAGCGATTCTAGCAAGATAAATCCTCTGGTACCTGTTGATCTTGTTATTGATCACTCAGTTCAAGTTGATGTAACAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAAAGAAACAAGGAAAGATTTGCATTTCTTAAATGGGGGTCGAATGCTTTCCGCAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTACATCAGGTGAATCTTGAGTACCTTGGACGTGTTGTTTTCAACAGTGATGGCTTGCTCTATCCTGACAGTGTGGTTGGTACTGATTCCCACACTACTATGATAGATGGGCTTGGGGTCGCTGGTTGGGGTGTTGGAGGCATCGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGTATGGTTTTGCCCGGTGTCGTTGGATTCAAGTTATCTGGGAAACTGCGCAATGGTGTTACAGCAACTGATTTGGTTTTAACTGTTACCCAAATTCTGAGGAAGCATGGCGTTGTTGGGAAATTTGTTGAATTTTATGGGGATGGCATGGGTGAGCTATCATTAGCTGATAGGGCCACCATCGCTAACATGTCTCCCGAGTATGGTGCCACCATGGGCTTCTTCCCTGTAGATCATGTTACTTTACAATACCTCAAGTTAACCGGAAGAAGTGATGAGACAGTTGCTATGATAGAGGAATATCTCAGGGCAAACAAAATGTTTGTTGACTATAATGAGCCTCAACAAGAAAGAGCATATTCATCCTATCTTGAACTAAACCTTTCTGATGTTGAGCCCTGTATCTCGGGACCAAAGAGACCTCATGATCGGGTGCTTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAAGCCCAGGGTAAAGTTGCAAAATTTCAATTCCACGGGCAGCCAGCAGAGCTCAAGCATGGAAGTGTTGTCATTGCTGCAATCACAAGCTGTACAAACACTTCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCTTATGAGCTTGGTTTGCAGGTCAAACCTTGGGTAAAAACAAGTCTTGCTCCAGGCTCTGGAGTGGTTACAAAGTATCTGCTTCAAAGTGGACTGCAGAAATTTCTAAATGAGCAGGGTTTCAATATCGTTGGATATGGCTGCACAACATGTATTGGCAATTCAGGGGAATTGGATGAATCAGTTTCTGCTGCCATATCAGAAAATGACATTGTAGCAGCTGCTGTGCTATCTGGAAACCGTAATTTTGAGGGTCGTGTGCATCCCTTAACCAGAGCTAACTATCTTGCCTCACCTCCTTTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTAATATTGACTTTGAAAAGGAGCCAATTGGGACAGGGAAGGATGGTAGGAGTATCTTCTTGAGGGATGTTTGGCCATCCGCTGAAGAAATTGCTGAGGCTGTCCAATCTAGCGTGTTGCCTAACATGTTCCGAAGCACCTATGAGGCTATTACCAAGGGCAATCCTATGTGGAATCAACTACAAGTTCCTGTGGAGACCCTTTATTCATGGGACTCCGAATCAACATATATTCATGAACCTCCATACTTTAAGGGCATAACCATGGATCCTCCTGGTGCTCATGGCGTGAAGGATGCATATTGCCTGCTGAATTTTGGTGACAGTATCACTACTGATCACATTTCTCCAGCAGGAAGCATTCATAAGGACAGTCCTGCTGCAAAATTCTTGCTTGAGCGGGGAGTGGATCGCAAGGACTTTAATTCTTATGGAAGTCGTCGTGGCAATGATGAAATAATGGCAAGGGGAACTTTTGCTAACATCCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAAACCGTTCACATTCCATCAGGGGAGAAACTCTCTGTATTTGATGCAGCAATGAAATACAAAGCTGCCGGGCAGGACACCATTGTTCTGGCTGGTGCCGAATATGGTAGTGGAAGTTCAAGAGATTGGGCTGCCAAGGGTCCAATGCTATTGGGAGTCAAAGCAGTGATTGCTAAGAGTTTTGAGAGAATTCATCGTAGTAATTTGGTAGGCATGGGTATTATTCCTCTTTGCTTCAAATCTGGCGAGGATGCTGACACACTTGGATTGACTGGTCATGAACGATACTCAATCGATCTCCCAAGTAAAATTAGTGACATAAGGCCTGGCCAAGATGTCACTGTCACCACTGATTCTGGAAAATCTTTCACCTGCACAGTACGCTTTGACACCGAGGTGGAACTTGCTTACTTCAATCACGGAGGCATCCTTCCATATGTTATAAGGAACCTCATTCAGCAGTGA 2793 0.4465 MATCQGASDSPLRHLTPTTIVCPPFKTILLQHKAGENPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENTSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSSKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNSDGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEEYLRANKMFVDYNEPQQERAYSSYLELNLSDVEPCISGPKRPHDRVLLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFQFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAYELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKFLNEQGFNIVGYGCTTCIGNSGELDESVSAAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVNIDFEKEPIGTGKDGRSIFLRDVWPSAEEIAEAVQSSVLPNMFRSTYEAITKGNPMWNQLQVPVETLYSWDSESTYIHEPPYFKGITMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAAMKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYSIDLPSKISDIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIQQ 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1011 930 PRINTS Aconitase family signature 232 245 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 469 480 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 203 211 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 322 335 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 179 192 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 308 321 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 404 418 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 246 261 IPR001030 -
Lele11g1011 930 PRINTS Aconitase family signature 531 544 IPR001030 -
Lele11g1011 930 Pfam Aconitase family (aconitate hydratase) 97 600 IPR001030 -
Lele11g1011 930 Gene3D Aconitase, domain 3 405 628 IPR015931 -
Lele11g1011 930 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 33 927 IPR006249 -
Lele11g1011 930 FunFam cytoplasmic aconitate hydratase 405 628 - -
Lele11g1011 930 ProSitePatterns Aconitase family signature 2. 531 544 IPR018136 -
Lele11g1011 930 CDD AcnA_IRP_Swivel 706 876 IPR044137 -
Lele11g1011 930 CDD AcnA_IRP 118 602 - -
Lele11g1011 930 TIGRFAM aconitase_1: aconitate hydratase 1 55 928 IPR006249 -
Lele11g1011 930 Pfam Aconitase C-terminal domain 729 856 IPR000573 -
Lele11g1011 930 FunFam Aconitate hydratase 692 929 - -
Lele11g1011 930 SUPERFAMILY Aconitase iron-sulfur domain 51 665 IPR036008 -
Lele11g1011 930 SUPERFAMILY LeuD/IlvD-like 669 927 - -
Lele11g1011 930 FunFam Aconitate hydratase 37 404 - -
Lele11g1011 930 ProSitePatterns Aconitase family signature 1. 465 481 IPR018136 -
Lele11g1011 930 Gene3D - 629 690 - -
Lele11g1011 930 Gene3D Aconitase, domain 4 693 929 IPR015928 -
Lele11g1011 930 Gene3D Aconitase, domain 3 36 404 IPR015931 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1011 Lele-ChrLele11 17215001 17223284 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1011 11 17215001 17223284 Lele29g0440 29 2682693 2684296 CCT
Lele11g1011 11 17215001 17223284 Lele31g1104 31 17784212 17785554 CCT
Lele11g1011 11 17215001 17223284 Lele32g0421 32 2651278 2652842 CCT
Lele31g1106 31 17791627 17792820 Lele11g1011 11 17215001 17223284 CCT
Lele32g0419 32 2642419 2643603 Lele11g1011 11 17215001 17223284 CCT
Lele11g1011 11 17215001 17223284 Lele11g1011 11 17215001 17223284 ECH
Lele09g1009 09 19132519 19148816 Lele11g1011 11 17215001 17223284 hybridization
Lele10g0967 10 20882437 20890050 Lele11g1011 11 17215001 17223284 hybridization