Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1003 ATGACCTCGGTGATAGGAAGGAACGGCGGCGTTGGTGGGTTTGGATCATCCTCAGCTCTCAGTCTCGGCCAGCCAAACATGATTGAAGCAGGTCATCAGCTCCACCACCACCACCCATTGGACATGGCTCCAAACACTACCTCCGAGAGCGATGTCCCCAGAATCCGAGGAGAAGACGACTTCGACAGTGCCACCAAGTCCGGCAGTGAAAACAACCAGGAAGCCGCCTCCGGCGACGACCATGATCCGCGTCCCAACAAGAAGAAGCGCTACCACCGCCACACCCAGCACCAGATCCTGGAAATGGAAGCTTTCTTTAAGGAGTGCCCTCATCCAGATGACAAGCAGAGAAAGGAACTGAGCCGGGAATTAGGGTTAGAGCCATTGCAGATCAAGTTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACCCAACATGAGCGGCAGGAGAACTCACAACTTAGAGCTGAAAATGACAAGCTTCGAGCAGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCCTCATGTCCAAATTGCGGTGGACCAACCGCCATAGGCGAAATGTCTTTCGATGAACATCATCTGAGAATGGAAAATTCTCGCCTACGAGAAGAGATTGATAGGATTTCAACAATTGCAGCAAAGTACGTGGGGAAGCCAGTGGTGAACTATCCACTACTTTCACCAACAAGTAGCATTCCTCCGCGGCCACTGGAACCTGGTGTGGGTGGTTTTGGTGGCGGCGGCGACGTATATGGAGGTGGTGGTGATGTTGTTAGGTCTATGAGTGGGCCGAACGAAGCCGATAAGCCGATGATAATAGAGCTAGCTGTGGCTTCCATGGAAGAACTTGTGAGGATGGCACAAATGGGTGAGCCCTTATGGATGACAACTCTTGATGGAACTACCTCTGTTCTTAACGAGGATGAATATATCAGAAGTTTCCCTTGTGGGATTGGTCCAAAACCTGCTGGATTCAAGTGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAATCATATTAGTCTTGTTGAGATTCTCATGGATGTGGTGACGTGGGTTGAGCATGTAGAGGTAGACGATAGAGGAGTTCATGATCTATACAAACAACTCGTCAACTCTAGAAATGCTTTTGGGGCAAAACGTTGGGTGGCTACCTTGGATCGACAATGTGAAAGGCTTGCTAGTTCCATGGCAACCAATATTCCTACCGGTGATGTTGGACGAGTGAGTGCTTCTACTGCTCACACGTGGACTACACTCTCTGGAACTGGGGCTGATGATGTACGGGTCATGACCCGTAAGAGTGTGGATGACCCGGGAAGACCTCCTGGCATTTTTCTCAGTGCTGCAACTTCTTTCTGGCTTCCAGTTCCTCCTAATCGAGTCTTTGATTTCCTCCGTGATGAGAACTCCAGAAACGAGTGGGATATTCTTTCAAATGGTGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGACAGGACACAGGGAATTGTGTATCACTGCTTCGGGTAAATAGTGCGAATTCGAGCCAAACCAATATGTTGATACTGCAAGAAAGCTGCAGAGACAGAACGGGGTCGTTTGTGGTATATGCACCAGTAGATATAGTGGCAATGAACGTGGTTCTAAATGGAGGGGATCCTGAGTACGTGGCACTCCTTCCTTCTGGATTTGCTATACTGCCAGATGATAATAATGGTGGATCACTCTTGACTGTTGCATTCCAAATTTTGGTGGACTCAGTTCCCACAGCAAAACTCTCTCTTGGATCTGTTGCCACTGTTAATAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTTCTTTATCTTGTGAAGCTGCTTCCTAA 1863 0.4799 MTSVIGRNGGVGGFGSSSALSLGQPNMIEAGHQLHHHHPLDMAPNTTSESDVPRIRGEDDFDSATKSGSENNQEAASGDDHDPRPNKKKRYHRHTQHQILEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKTQHERQENSQLRAENDKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRMENSRLREEIDRISTIAAKYVGKPVVNYPLLSPTSSIPPRPLEPGVGGFGGGGDVYGGGGDVVRSMSGPNEADKPMIIELAVASMEELVRMAQMGEPLWMTTLDGTTSVLNEDEYIRSFPCGIGPKPAGFKCEASRETAVVIMNHISLVEILMDVVTWVEHVEVDDRGVHDLYKQLVNSRNAFGAKRWVATLDRQCERLASSMATNIPTGDVGRVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIFLSAATSFWLPVPPNRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQTNMLILQESCRDRTGSFVVYAPVDIVAMNVVLNGGDPEYVALLPSGFAILPDDNNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAAS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1003 620 SMART HOX_1 86 149 IPR001356 GO:0003677
Lele11g1003 620 SUPERFAMILY Bet v1-like 416 611 - -
Lele11g1003 620 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 353 614 IPR042160 -
Lele11g1003 620 Gene3D - 73 162 - -
Lele11g1003 620 SUPERFAMILY Homeodomain-like 77 145 IPR009057 -
Lele11g1003 620 Coils Coil 144 171 - -
Lele11g1003 620 Pfam START domain 353 395 IPR002913 GO:0008289
Lele11g1003 620 Pfam START domain 277 352 IPR002913 GO:0008289
Lele11g1003 620 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele11g1003 620 FunFam Homeobox-leucine zipper protein HDG1 73 161 - -
Lele11g1003 620 CDD homeodomain 88 146 IPR001356 GO:0003677
Lele11g1003 620 Pfam Homeodomain 88 143 IPR001356 GO:0003677
Lele11g1003 620 ProSiteProfiles START domain profile. 267 493 IPR002913 GO:0008289
Lele11g1003 620 MobiDBLite consensus disorder prediction 37 94 - -
Lele11g1003 620 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1003 Lele-ChrLele11 17085966 17090264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g1003 353 619 Homeobox Transcription Factor Family AT1G05230 79.599 3.34e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele11g1003 START 8.2e-06 CL0209