Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g1000 ATGGATTGGACCATGTCGGGGTTTGGAGTAGACTATCGGCAACCCCCTTATAATTTCTTTCAACTTCCTCTTTCTCCTTTATTTCTCTCCCCCATAGCAGTTCCTGTTGAAGGAGGAATTCAGAATTTCACTATGAGGGTTGTTATCGCCACAAGAACAAACCAGTTTTTCATTGAAGTAGAAAGCCAAGAAAAAGTAGTTGAAATCAAAAGGAAAATAGAACAAATCCTCAGCATCCCAGTAGCTTCACAGATTCTTACAGTATCTGGGTGGGAGCTTATAGATGGATTAGACATGGAAGATTACCCCATAGTTACAGATGGTACAAAAGTTGACCTCACCATCAAACCAGTCTCTTCTCAACTTTCTTCCCATTTTAATAAAATCCAAATCATAGTAAAGTTTTCAGCACGACAGGTCATCATAGAGGCGGATAAAACAGACACAGTTCGTAGTTTGAAGGAAAAGATTCACATTCTTGATAACACACCAATCAAAAGAATGTCACTTTTCTTTTCAGGTGTGGAATTGGATGAAGATTTCAGAAACTTGAGTGAATATGGCATAAGTGAGTTTTCTGAGATTATTGTGTTCCTCAAGACGATGAGTCGCTCAAGAGATGATCCTCCTTCAAGGAAGTTGAGTTTGGTGGTGCAAACTTCTTCTAGTTTGCTTAATGCAGCAACGATTCCAGTGGAAATGAGAGATGCAAGTACTGTAAATGAGTTAAAGGAAATGTTGTTGAGCAGAAAAATTCTGCCACTTGATGAATATTTATTCATACACAAGCAAAGGATAATGCGTGATGGCTGTAGCCTTAGGTGGCATGGAGTTGAAAATGGAGACTTTCTTTACGTCTTCAAAGGAACTGTTAGTCGCAGTGGCAGTTTCTAA 894 0.3904 MDWTMSGFGVDYRQPPYNFFQLPLSPLFLSPIAVPVEGGIQNFTMRVVIATRTNQFFIEVESQEKVVEIKRKIEQILSIPVASQILTVSGWELIDGLDMEDYPIVTDGTKVDLTIKPVSSQLSSHFNKIQIIVKFSARQVIIEADKTDTVRSLKEKIHILDNTPIKRMSLFFSGVELDEDFRNLSEYGISEFSEIIVFLKTMSRSRDDPPSRKLSLVVQTSSSLLNAATIPVEMRDASTVNELKEMLLSRKILPLDEYLFIHKQRIMRDGCSLRWHGVENGDFLYVFKGTVSRSGSF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g1000 297 Gene3D - 42 117 - -
Lele11g1000 297 CDD Ubl_ubiquitin_like 131 198 - -
Lele11g1000 297 ProSiteProfiles Ubiquitin domain profile. 214 286 IPR000626 GO:0005515
Lele11g1000 297 PANTHER UV EXCISION REPAIR PROTEIN RAD23 45 118 - -
Lele11g1000 297 ProSiteProfiles Ubiquitin domain profile. 45 104 IPR000626 GO:0005515
Lele11g1000 297 Pfam Ubiquitin family 131 200 IPR000626 GO:0005515
Lele11g1000 297 Pfam Ubiquitin family 225 286 IPR000626 GO:0005515
Lele11g1000 297 Pfam Ubiquitin family 52 116 IPR000626 GO:0005515
Lele11g1000 297 Gene3D - 201 293 - -
Lele11g1000 297 SUPERFAMILY Ubiquitin-like 44 119 IPR029071 -
Lele11g1000 297 CDD Ubl_ubiquitin_like 56 113 - -
Lele11g1000 297 SUPERFAMILY Ubiquitin-like 124 211 IPR029071 -
Lele11g1000 297 ProSiteProfiles Ubiquitin domain profile. 129 204 IPR000626 GO:0005515
Lele11g1000 297 SUPERFAMILY Ubiquitin-like 228 290 IPR029071 -
Lele11g1000 297 SMART ubq_7 45 116 IPR000626 GO:0005515
Lele11g1000 297 SMART ubq_7 129 200 IPR000626 GO:0005515
Lele11g1000 297 SMART ubq_7 214 289 IPR000626 GO:0005515
Lele11g1000 297 Gene3D - 128 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g1000 Lele-ChrLele11 17024714 17026078 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1000 11 17024714 17026078 Lele11g1000 11 17024714 17026078 ECH
Lele09g0997 09 18952674 18953435 Lele11g1000 11 17024714 17026078 hybridization
Lele10g0953 10 20742545 20742973 Lele11g1000 11 17024714 17026078 hybridization