Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0990 ATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACGGGGATCGATACCCCGCATCTCCAAAATGATCGTTTTCTTTCTTCCCCTTTTCACTTTTCTTTCTCCGTTTCCAAAAGACGTTCTCCGGCTTTTCCCCACTTTTCACTTTCTTTCTCCGTTTCAGTTACCACCTTCTTACGCTCTAGTCACTGCGCAGGCGCCGTGCTTCTCCTTCATGAATGGCACCTTCTCTCTCATCCTCAAACGGTGTAGCGATAGAGCCCTTCTTATCAAATCTGCATACACCACTGTCACTCACTTGCCGGAACAAGTTCTTGTCCGCCCACTCGCCTCCTTACGATGCGGAACGGTGTTGCAGTCACTCACCGATACCAAATCCGACGCAAAGTGTCTGCAACTTCATGCCCACATGATCACTTGCGGTACTCTGGTAGACAACACCTATCTGAATACAAAGCTCGCTGCCTGCTACAGTGGTTGCAGTTGCATGGCTGCAGCTCAGGTAATATTCGATCAAATTGTCTTTAAGAGTTCTTTTTTATGGAATTTCTTGATTAGAGGTTATTCTTGTTATGGGAATGTCTTGCGGTCTCTTGTTCTGTATCGTCAAATGTCCAGTGTTGGACAAAAGCCACATAATTTTACGTACCCTTATGTTCTCAAAGCGTGTGATGATCTACTTCTCAACGAAATCGGCATAAAAGTTCATGCATTGGTATTGATTACCGGCTTGGCATCTGATATTTATGTAGGCAATTATCTGCTTTCAATGCATTCCAAATTTGGGTATATGGAAACTGCAAGAATACTGTTTGATAATATGCCTGAAAGGGATTTAACATCTTGGAACACTATGATATCAGTGGGAAAGGCTATTCATGGTCATGTTCGAAATAGTGACACATCCCACCAACAGTCAGAAGATATTTGTTCCAAATTAAAGCACCTGAATGAGAAACTTAAGAATGCTGGTTACAAGCCTGACATTTATTCAGTTCTCTATGATGTTGAGGAAGAAGTAAATGAGAAGATGCTTTGGGTTCACAGCGATAGGTTGGCGCTTGCTTTTGCTCTTATTAGTACTGGTCCAGCAACCACAATCAGAATAATAAAGAATTTTCGTGTATGTGGAGATTGTCATACAGTAATGAAAATGGTTTCTAAGCTCATGAGTCGAGAAATCATCATGATCGATATTGATCGATTAAGTGACCCTGATGCCTGCATGATACAGGCAACTTCTCAAACGAATATGAAAGGCTATTTTCGGTTTTTGGTTGATAAAGTGGCTGTTTTCGTTCTGTTGTGGTTTATATGTATTTATTATATTCTTACGCTATTTATTCAGTGCGCTTTAATCCTCTCTCACACACACACTGTTCCTTCTGCTTTCACTCGCAATATGGACATCGACTCCTCACACACCTCCAATTGGCTCTGTGATTATGGTTTTGATGTTTCTGTTGCCGTAGCTGAATTCCCCGTCGTCCCTTCAGGCGGTTTCAGCTGGGTCTCTCCTACTTTCAACGATTCTTCTGATACGAGCTTGGACCTGGAATACTCACTGGACAATTCAACTTTCCTGGAAAATGGCCCTTCAAAGCGGTTGAGGAATGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACAACGGAGGGATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGTCTGGTAAGCTGCCCAAGATGGATAAGGCTGCTATATTAAGTGATGCAGTTCGAACTTTAAAAGAACTACGAAGTGAATCCCAGAAGCTGAAGGAAACAAATGATGAATTGCTTGAAAAGATCAAGGAACTGAAGGCAGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACAGGTCAAAGGGATGAATGCACACCCGACCTTTCTTTCTCATCCTGCTGCTGCTGCTGCTGCATTTACTGCTCAAGGCCAAACTGCAAGCCACAAGTTGATTCCTTTTGTTGGCTATTCTGGAATTGGCATGTGGCAGTTTTTGCCACCTGCGGCTGTTGATACATCTCAGGATCATATTCTTCGCCCTCCTGTTGCTTAA 2106 0.4316 MVERSLSMREVRGSIPRISKMIVFFLPLFTFLSPFPKDVLRLFPTFHFLSPFQLPPSYALVTAQAPCFSFMNGTFSLILKRCSDRALLIKSAYTTVTHLPEQVLVRPLASLRCGTVLQSLTDTKSDAKCLQLHAHMITCGTLVDNTYLNTKLAACYSGCSCMAAAQVIFDQIVFKSSFLWNFLIRGYSCYGNVLRSLVLYRQMSSVGQKPHNFTYPYVLKACDDLLLNEIGIKVHALVLITGLASDIYVGNYLLSMHSKFGYMETARILFDNMPERDLTSWNTMISVGKAIHGHVRNSDTSHQQSEDICSKLKHLNEKLKNAGYKPDIYSVLYDVEEEVNEKMLWVHSDRLALAFALISTGPATTIRIIKNFRVCGDCHTVMKMVSKLMSREIIMIDIDRLSDPDACMIQATSQTNMKGYFRFLVDKVAVFVLLWFICIYYILTLFIQCALILSHTHTVPSAFTRNMDIDSSHTSNWLCDYGFDVSVAVAEFPVVPSGGFSWVSPTFNDSSDTSLDLEYSLDNSTFLENGPSKRLRNESCASGSKACREKQRRDRLNERFLELSSILESGKLPKMDKAAILSDAVRTLKELRSESQKLKETNDELLEKIKELKAEKNELRDEKNRLKMDKEKLEQQVKGMNAHPTFLSHPAAAAAAFTAQGQTASHKLIPFVGYSGIGMWQFLPPAAVDTSQDHILRPPVA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0990 701 Pfam Helix-loop-helix DNA-binding domain 544 591 IPR011598 GO:0046983
Lele11g0990 701 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 540 591 IPR011598 GO:0046983
Lele11g0990 701 Coils Coil 581 643 - -
Lele11g0990 701 Pfam DYW family of nucleic acid deaminases 323 401 IPR032867 GO:0008270
Lele11g0990 701 PANTHER BHLH TRANSCRIPTION FACTOR 472 701 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele11g0990 701 Pfam PPR repeat 179 205 IPR002885 -
Lele11g0990 701 Pfam PPR repeat 251 277 IPR002885 -
Lele11g0990 701 CDD bHLH_AtILR3_like 545 620 - -
Lele11g0990 701 Gene3D - 544 621 IPR036638 GO:0046983
Lele11g0990 701 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Lele11g0990 701 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 546 615 IPR036638 GO:0046983
Lele11g0990 701 SMART finulus 546 597 IPR011598 GO:0046983
Lele11g0990 701 Gene3D Tetratricopeptide repeat domain 232 348 IPR011990 GO:0005515
Lele11g0990 701 Gene3D Tetratricopeptide repeat domain 89 230 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0990 Lele-ChrLele11 16845151 16853945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0990 471 701 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.661 2.72e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele11g0990 DYW_deaminase 1.2e-28 CL0109