Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0948 ATGTGGCACTTCCATGCCACATATGGAAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTTCTAGGGATGCTGAAGCAGGAGTTCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCTGATCTGCCCGAAAAAATAATTCAAGACAGATACTGTGATTTAAGTCCTGTACAGCTTAAACTCTATGAACATTTTTCTGGTTCTCGTGCCAAACAAGAAATCTCATCTATGGTAGCAGTGAATGAATCAGCTGCGACAGAAGGAAGCAGCAGATCACCCAAAACATCTTCACATGCACTTCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTTATTGGTGAGAAGATTCCTGATCAACTCTCTACCATTCTCTCAGAATTGCTTTTCTGGATATTATTGAGAAAGATTTATTCCAGACATATATCAAGACGTTATGTCGCATATTTGCGACTGGATGGATCTGTTGAGCAGAAGAAGCGTTTTGAAATTGTCAAAACTTTCAATTCAGACCCTACCATTGATGTATTGTTGCTTACAACGCATGCTCATGCTATAAAGACGTATCTCATGTTATTGACCTTGCAGGCTATGGACAAAGCACACCGTTTAGGTCAGAAAAAAGTTGTCAATGCCCACCGTCTAATAATGCGTGGTACTTTGGAAGAAAAGGTCATGAGTCTACAAAGATTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGCATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACACCGGCAGAAACCTCGAAGAAGGGAGCTTCTGCTGCGAACCGATCAAATGACACATATGGAGATACTAAATCCGTGCGCAGTGGGAAGGGGTTGAAAGCAGTACTCGGAGGTTTGGAAGAGCTTTGGGACCATTCACAATATACAGAAGAGTACGATCTGACTCAATTTTTGTCAAAGCTTAATGGCTGA 1011 0.4154 MWHFHATYGKPLLAARDPKCSSRDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEHFSGSRAKQEISSMVAVNESAATEGSSRSPKTSSHALQYLLKLCSHPLLVIGEKIPDQLSTILSELLFWILLRKIYSRHISRRYVAYLRLDGSVEQKKRFEIVKTFNSDPTIDVLLLTTHAHAIKTYLMLLTLQAMDKAHRLGQKKVVNAHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTPAETSKKGASAANRSNDTYGDTKSVRSGKGLKAVLGGLEELWDHSQYTEEYDLTQFLSKLNG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0948 336 MobiDBLite consensus disorder prediction 280 299 - -
Lele11g0948 336 CDD SF2_C_SNF 154 230 - -
Lele11g0948 336 Gene3D - 30 55 IPR038718 -
Lele11g0948 336 Gene3D - 56 197 IPR027417 -
Lele11g0948 336 Gene3D - 207 309 IPR027417 -
Lele11g0948 336 Pfam SNF2-related domain 32 123 IPR000330 GO:0005524|GO:0140658
Lele11g0948 336 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 159 335 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lele11g0948 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 274 IPR027417 -
Lele11g0948 336 MobiDBLite consensus disorder prediction 280 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0948 Lele-ChrLele11 13873517 13877906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0948 142 274 RAD5 or RAD16-like Gene Family AT5G22750 28.000 3.13e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele11g0948 SNF2_N 9.4e-09 CL0023