Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0900 ATGGTGAGAAATCCCTCTTACGACAAAAATGGAGTGAAGAAAGGTGCGTGGAGTAGAGAAGAGGATGACAAACTCAGAGCCTATGTTCTGAGACATGGTCATACCAATTGGCGTCATCTACCCAAGCTTGCAGGTTTAGCAAGGTGCGGAAAAAGTTGCAGACTCCGTTGGATGAACTACCTGCGGCCAAATCTAAAACACGGAAACTACACTCAAGAAGAGGATCAACTTATCACCAAATACCACCAACAACTTGGGAATAAATGGTCACTGATTGCTGAGAAACTACCCGGAAGAACGGACAATGATATAAAGAACCACTGGCACAGCCACCTAAAGAAGAACTTAAACCACAATAATGACACTAGGAAGGAGGTGAAATATTTGCAGACAGCAGAATATACAGAATCTGAACGACCATGTGAGTTTTTGGGTTCTGAATCAAAGAGTAGTCACCATATACTGGAAAGCTCATTGGTATCGCCCACTTCTTCAGAAACATCCTTCACCATCAAGTATTGCAGGGAAGATCGAGATCACAGTGTTGCTTCCTGGGAAACATCGTCTCAAGAACTACTAAGCTGTGATTTTTGGAGCAGACCATTTTTAGTGGAAAATACATCTGCTTATTATGATGACTTTGCCCCCGAAATATTTTGGTACCCTTATGAGGGGACAGATTTGAGTGACCTCCAAGGCATTGTAAACATATAA 714 0.423 MVRNPSYDKNGVKKGAWSREEDDKLRAYVLRHGHTNWRHLPKLAGLARCGKSCRLRWMNYLRPNLKHGNYTQEEDQLITKYHQQLGNKWSLIAEKLPGRTDNDIKNHWHSHLKKNLNHNNDTRKEVKYLQTAEYTESERPCEFLGSESKSSHHILESSLVSPTSSETSFTIKYCREDRDHSVASWETSSQELLSCDFWSRPFLVENTSAYYDDFAPEIFWYPYEGTDLSDLQGIVNI 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0900 237 Gene3D - 69 139 - -
Lele11g0900 237 FunFam Transcription factor RAX3 7 67 - -
Lele11g0900 237 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 172 - -
Lele11g0900 237 Gene3D - 6 67 - -
Lele11g0900 237 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele11g0900 237 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele11g0900 237 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Lele11g0900 237 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele11g0900 237 SMART sant 66 114 IPR001005 -
Lele11g0900 237 SMART sant 13 63 IPR001005 -
Lele11g0900 237 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele11g0900 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele11g0900 237 CDD SANT 16 61 IPR001005 -
Lele11g0900 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele11g0900 237 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0900 Lele-ChrLele11 9262193 9263579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0900 1 208 MYB Transcription Factor Family AT2G31180 45.673 5.25e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele11g0900 Myb_DNA-binding 1.1e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0900 11 9262193 9263579 Lele29g0497 29 2999917 3002013 CCT
Lele11g0900 11 9262193 9263579 Lele30g0913 30 12926396 12928813 CCT
Lele11g0900 11 9262193 9263579 Lele32g0472 32 2946313 2948702 CCT
Lele09g0894 09 7399063 7400439 Lele11g0900 11 9262193 9263579 hybridization