Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0880 ATGGCCTCCCCTACCCTCATTACCCCAACTTCCACCCCAAAATCACTCCCTCCAACTAAGCCCAAATCCCCCATCATCGCCGCCACCTCCTCCACCACAACGTGCGCCCAGCCTCGCCGCCGTGAATTCCTCTCCATCGCCTCCTCGGTCACCTCCATCTTATGCATCAACCTCAACCCTCTGCTGCCAGCACTAGCTGCTTCAGACGAAGAATATGTGAAGGAAACAGAGGAAGTGATCAGCAAGGTGAGAACCACTATTACAATGGACAAGAACGACCCCAATGTTGCAGACGCGGTGGCTGAGTTGAGAGAGACGTCCAATTCCTGGGTGGCGAAGTACCGGAGAGAGAAAGCTCTGTTGGGAAAGGCATCGTTTCGTGATATGTACTCAGCACTGAATGCAGTTTCAGGGCATTATATTAGTTTTGGACCCACTGCTCCAATTCCTGCAAAACGCAAGGCCAGGATCTTGGAGGAGGTCGACACTGCTGAGAAGGCTCTGCAAAGAGGAAGGTGA 519 0.5299 MASPTLITPTSTPKSLPPTKPKSPIIAATSSTTTCAQPRRREFLSIASSVTSILCINLNPLLPALAASDEEYVKETEEVISKVRTTITMDKNDPNVADAVAELRETSNSWVAKYRREKALLGKASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALQRGR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0880 172 MobiDBLite consensus disorder prediction 1 32 - -
Lele11g0880 172 Gene3D Photosystem II Pbs27 67 172 IPR038450 -
Lele11g0880 172 FunFam Photosystem II lipoprotein Psb27 67 172 - -
Lele11g0880 172 Hamap Photosystem II lipoprotein Psb27 [psb27]. 48 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele11g0880 172 Pfam Photosystem II Pbs27 58 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
Lele11g0880 172 PANTHER PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC 66 168 IPR025585 GO:0009523|GO:0010206|GO:0010207
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0880 Lele-ChrLele11 8859413 8859931 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0880 11 8859413 8859931 Lele29g0530 29 3222159 3223013 CCT
Lele11g0880 11 8859413 8859931 Lele31g1016 31 17185750 17186604 CCT
Lele11g0880 11 8859413 8859931 Lele11g0880 11 8859413 8859931 ECH
Lele09g0873 09 6994984 6995502 Lele11g0880 11 8859413 8859931 hybridization
Lele10g0801 10 6410236 6410760 Lele11g0880 11 8859413 8859931 hybridization