Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0867 ATGGCCTTAGATTTGCAGTTAGAGGATTCTGCAGCACAAGCTGATGCTTCTGGGGATAAATCTTGTTTGGAAAACTGGAATTCTGCTCCTGAAGACATTGCAGATTGTGATAGGGATGCTTCTGGTGACTTTGAATGCAATATCTGCTTGGATTCCTTGCATGATCCTGTCTTAACTCTTTGTGGCCATCTCTTTTGCTGGCCCTGCATTTACAAATGGCTCCATTTTAGTAATGTTTCTTCTCAAAAATGCCCAGTATGCAAATCAGAAATCTCTCAATCCTCCCTCATTCCGGTATACGGGCGAATCCAAATCACAACACCTTCTGAAGGCAACAAGTCTCACAATGTAGGGATCACCATACCTCCAAGACCTCACCGAGGTCCCGTGTCAGTTCATGACTCACGAAGATCATATGAAACCGGGGCTGCTTCCCAACCAGCTACTCGATTTCATGCACTCACTTATCCTTATCAGGCTCAACAGTTCAATGCATTTGACACAACACATGGAGTTTTTGGTCAGATAATGTATGGAAGAGTGTTCGGCAACCAGTTGACAAACATGTTCACTTCTAATTCATATGGTGTCGCGGCGAACAACAATCCAAGGGTGAGAAGGCATTTGATGCAAGTAGATAAATCACTGAGCAGAATCTGGTTTTTCCTCTTCTGCTGCTTAGCTTTGTGTCTTCTCTTATTCTGA 705 0.4355 MALDLQLEDSAAQADASGDKSCLENWNSAPEDIADCDRDASGDFECNICLDSLHDPVLTLCGHLFCWPCIYKWLHFSNVSSQKCPVCKSEISQSSLIPVYGRIQITTPSEGNKSHNVGITIPPRPHRGPVSVHDSRRSYETGAASQPATRFHALTYPYQAQQFNAFDTTHGVFGQIMYGRVFGNQLTNMFTSNSYGVAANNNPRVRRHLMQVDKSLSRIWFFLFCCLALCLLLF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0867 234 Pfam RING-type zinc-finger 46 85 IPR027370 -
Lele11g0867 234 SUPERFAMILY RING/U-box 40 100 - -
Lele11g0867 234 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Lele11g0867 234 SMART ring_2 46 87 IPR001841 -
Lele11g0867 234 MobiDBLite consensus disorder prediction 110 134 - -
Lele11g0867 234 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lele11g0867 234 CDD RING-HC_AtRMA_like 44 89 - -
Lele11g0867 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele11g0867 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0867 Lele-ChrLele11 8697295 8697999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0867 39 234 C3H Transcription Factor Family AT4G28270 39.904 6.28e-46 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1017 31 17192777 17201688 Lele11g0867 11 8697295 8697999 CCT
Lele32g0506 32 3164003 3171520 Lele11g0867 11 8697295 8697999 CCT
Lele29g0530 29 3222159 3223013 Lele11g0867 11 8697295 8697999 CCT
Lele11g0867 11 8697295 8697999 Lele11g0867 11 8697295 8697999 ECH
Lele09g0857 09 6868350 6871529 Lele11g0867 11 8697295 8697999 hybridization
Lele10g0788 10 6258608 6259357 Lele11g0867 11 8697295 8697999 hybridization