Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0852 ATGTCACTGCACGCTTTCAAGGAAACTCTCAATCCTTGCTCAAGCCAACCGTCTTCTTCCACATCGGTTAGCCGAACGAAGTCTTCGTTTTTCCGAGATTCCGAGCTCCCAATCCCTAGGAAACCCCCAAAGTCCTCTCTCTCCCATCAGCTTCGTCGCCTGCAAGGCCCACTTGCTCCTCCTCTAATTCAGCCTACCAATTCACGTAAGAGAGAAAGGGAACAGAAAGGTAGTGACGTCGTGATTGAGGAAGAAGAAGAGGACGAGGAGGATGAGGAGCCAGAATTGAAGAGGGCGAGATTCGACGGAGATAAATTGTGTCAGTTTCAGTTCGATCATACTGGATCCTTTGAGCCTCTGCTTTTGTACTTGCATGGAGAAGCTCCAGTGGTTCAGTTCAAGAATAGTTTGAAATATGAAGAAAACTATTCTTTTAAAGAGCAATTCATTGTTTCAGTGTATGCTTATAGAGGACATAACCTTGCTATTGTTTTGGTATTCCAGTATCAGGATGCCGGAAACTTGGTCTATAGAAGCCTGACATTGGCCTTTAGTGAGCCCTCTACATGTTGCTTTCTTCATTTTCTCACTACAGACAGTACAAGCACTAAAGTTGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGATATTGATGAGGCTCATCGTCTCAAGAATGAGAAATCCAAACTCTGCAGAGCATGTTTAGAAATAAAAACCCAAAAGCGTTTTGGTCTTACTGGCACGATCATGCAAAATAAGATCATGGAACTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGGACACAGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCAAGGTCAACTGCTCCAAAGAGGGGCAAATAGGAGAATGTTACAACTTCCCGATATCCAATGCCTTATTAATAAGGATTTGCCTTGGAGTTGTGGAAGCCCACTCACGCAAGTTGAATGTCGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTTCTCAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCTTTGCCTTGTCAAGCTCCAACAGATAAGCAATCGCCTTGAGCTGATCAAGCCAAACACCAAAGATGACCAGGACAAACAAAGAAAAGATGCAGAGTTTGCTGCTGCAGTCTTTGGCCCTGATATTGATTTGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGACTGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACAGCTCCTCAAGACTTGATAGATCTACTCCAACTAATTTACGTCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAACAAAACAAGTATTCTTGATATCAACTCGAGCTGGTGGTCTTGAATTAAACCTTGTCAGTGCAAATCGTGTGGTGATATTTGATCTCGGAATCCCGCTCAAGACTTACAGGCACAGGACCGAAGAAGCTGATATATTAGTATCAGATTCTGGGAACCAGTTATCAACCAGTCAAAAGAGGACTTCAACGAGTGAAGCAAATCTGGAAGATCTTGGTATGCTTCATATGCCTAGATCCCATCCAATGTTAAAGTCCCCTCCTTCTTGGAACATGAGACCTGCGTGTTGCCATTCAGAAGATAGTTTCGAAATTGAAACTGATTAA 1722 0.4257 MSLHAFKETLNPCSSQPSSSTSVSRTKSSFFRDSELPIPRKPPKSSLSHQLRRLQGPLAPPLIQPTNSRKREREQKGSDVVIEEEEEDEEDEEPELKRARFDGDKLCQFQFDHTGSFEPLLLYLHGEAPVVQFKNSLKYEENYSFKEQFIVSVYAYRGHNLAIVLVFQYQDAGNLVYRSLTLAFSEPSTCCFLHFLTTDSTSTKVVEILITSFDTYRIHGSILSEIKWDIVDIDEAHRLKNEKSKLCRACLEIKTQKRFGLTGTIMQNKIMELFNLFDWVVPGSLGTQEHFRDFYDEPLKQGQLLQRGANRRMLQLPDIQCLINKDLPWSCGSPLTQVECRKRIVSNGIIWPYLLRDNPDGCDSCPFCLVLLCLVKLQQISNRLELIKPNTKDDQDKQRKDAEFAAAVFGPDIDLGDKILLFSYSVRLLDILEKFLIRKGYSSSRLDRSTPTNLRQSLVDDFNSSPTKQVFLISTRAGGLELNLVSANRVVIFDLGIPLKTYRHRTEEADILVSDSGNQLSTSQKRTSTSEANLEDLGMLHMPRSHPMLKSPPSWNMRPACCHSEDSFEIETD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0852 573 Pfam Helicase conserved C-terminal domain 416 505 IPR001650 -
Lele11g0852 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 506 IPR027417 -
Lele11g0852 573 Pfam SNF2-related domain 199 314 IPR000330 GO:0005524|GO:0140658
Lele11g0852 573 Gene3D - 370 497 IPR027417 -
Lele11g0852 573 MobiDBLite consensus disorder prediction 1 97 - -
Lele11g0852 573 PANTHER SNF2/RAD54 FAMILY MEMBER 203 303 - -
Lele11g0852 573 CDD SF2_C_SNF 413 495 - -
Lele11g0852 573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 560 IPR001650 -
Lele11g0852 573 SMART helicmild6 430 507 IPR001650 -
Lele11g0852 573 Gene3D - 187 323 IPR038718 -
Lele11g0852 573 MobiDBLite consensus disorder prediction 7 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0852 Lele-ChrLele11 8535306 8540880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0852 370 495 RAD5 or RAD16-like Gene Family AT1G11100 27.068 9.73e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele11g0852 SNF2_N 2.6e-18 CL0023