Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0849 ATGCCATCAGCTGCGACTAATAAGGGGCTTGCCCAAATGTTATGCTTAGGATTTAATATGGTTGCCCCTAAAAAATCGAACTTTTGGTTGTTTAAGAGGAAGGGACAAGGGTTTTTATTCCAGATTGTGTATATGTGGTGGGTTGTTCTACTTTTACTTCGACCTGTGGCGAGTCTGAGACCATTAAGAGAAAGAACTCTGTCATGGAGCGATGAGTGGCTATTTTCAACAAAAGATGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAATTTTTTAGATACTGCAAATGGCTCTTCAAGATTTTCAGACCTGAGAAAAACAAATGGCAATTCTGTAATTGAATTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTGATTATATTCCATACTGTGTTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGCGGAAGGTGCATATATATGGCCCTTCAAACAGCTTCGAATGGTAGCTAACAGTGGAAAAGAGGGAAATTCAAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACAGAGGGAAGAAAATATTCACCTATATATGACATGGAGAAACATTGTAATATTGAAATTGCAGCACAGTTTTCACGCCTATCATCATCAAAGAATGAGGGGAATCATGATCAATTCCGCCTAGAAGGGTTGATGGAGAGTCCCTCAGTGGATGATGATGGGGATTGCTTCTCACCTTTAATGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAACAGTGAACTACACCTTGATGGTTACCTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATTATCATGATTGGACAACAGGCTATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCGATCTTTGAGATGAGATATCTCCTTGCAATATGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGGTGGGAGACAATGAGGCGTGAGCTCTCATCTTTATACATTCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGTTCATGTACCAGTTCCATTATTATTTGAGACCTATACTTCTTCTCATGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGAGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTCACTCGCCTAGCAGTGCCATTATATATATTTGGTTGCCCAAAAAACTTCATGCGCATTGAACCAGACAACAGCTGGTGTTTGTGTTTGGCTGTATTTATTGGACTTCAGGCTGCCATTCTTCTACTTCAGAACTATCTTGGGTCCCGCTGGTTCATTCCTCGTCAGATTCTGCCTGAGAAATACAGTTATTACAGAAGATTTGGTCCAAATACAAATCATACTACTGATTGTGTTATTTGCATGACAGCTATTGATCTTTCTCAGCGATCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTATTTGTTTGCAAAGATGGATGAATATAAAGATGGAATGCCCGACATGCCGGCGCCCTCTGCCGCCTGATTAG 1761 0.3952 MPSAATNKGLAQMLCLGFNMVAPKKSNFWLFKRKGQGFLFQIVYMWWVVLLLLRPVASLRPLRERTLSWSDEWLFSTKDESDQFSQWNITGTYKGTWNFLDTANGSSRFSDLRKTNGNSVIELFSTPTKITGVHYVQGVIIFHTVFDNEYNVGGAQIRAEGAYIWPFKQLRMVANSGKEGNSNQDEDYILSNPYHLLGLFSSQVFQESSRDKTEGRKYSPIYDMEKHCNIEIAAQFSRLSSSKNEGNHDQFRLEGLMESPSVDDDGDCFSPLMLNATSVNIEVYYNKTVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSSLYIRFYGILVGGILFMYQFHYYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYIFGCPKNFMRIEPDNSWCLCLAVFIGLQAAILLLQNYLGSRWFIPRQILPEKYSYYRRFGPNTNHTTDCVICMTAIDLSQRSNDCMVTPCEHFFHSICLQRWMNIKMECPTCRRPLPPD 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0849 586 ProSiteProfiles Zinc finger RING-type profile. 536 580 IPR001841 -
Lele11g0849 586 SUPERFAMILY RING/U-box 535 585 - -
Lele11g0849 586 FunFam E3 ubiquitin-protein ligase, putative 522 586 - -
Lele11g0849 586 PANTHER RING ZINC FINGER PROTEIN 122 585 - -
Lele11g0849 586 Pfam Ring finger domain 535 580 IPR001841 -
Lele11g0849 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 586 IPR013083 -
Lele11g0849 586 SMART ring_2 536 579 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0849 Lele-ChrLele11 8503417 8511101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0849 533 584 C3H Transcription Factor Family AT1G53010 33.962 3.70e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0849 11 8503417 8511101 Lele30g0843 30 12510693 12511666 CCT
Lele11g0849 11 8503417 8511101 Lele32g0546 32 3385064 3386085 CCT
Lele11g0849 11 8503417 8511101 Lele11g0849 11 8503417 8511101 ECH
Lele09g0843 09 6683797 6691987 Lele11g0849 11 8503417 8511101 hybridization
Lele10g0770 10 5990065 5998090 Lele11g0849 11 8503417 8511101 hybridization