LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0847	ATGATACCTCTTCGCGTCACTCAGCTCCGCCGTGCAGTTCTCCGCCTGGCAACACCGCATACCACTTCCTCCTCCTCCTCCGGTGGCGGCGGCGGCAGACCCTTTCTTCACGGACACTTTCTTCCTTTGCTCATCTTCCCCCGACAGCAAGAATCCATTTTTCTTCTCCTCGTAATCCCCCAACCCCAAAGAAGCCTCCCTCTTCACCACCGTCTACGGTTTAATTTCATCCATTCAGTTCAGCCCTCTCTCTCATGGGAGAGATCCAGATGGAAACAAGATATTTTTGTAGCAGAAGGCTCAAAACTAGAAATTAAAAACAGAGAAGGGAATGGAGAAGCATCCCCGGGAAGTGGTGGGCCCCTGAAGATTGTCGAGAGGACAAGGGAGGGTGCTCAGCTTCGCAAAACGCAGACATTTCCCATTTTCAGTTCCACAAGCACGATGACGAAGATAGATAATTTCCTGATTTCCAGGGTCAACGAAGATGCTCAGGATCCTATCTTACCTTACCTCCGGTCTATTAGGGAAGCTCTTGAAGATTCTATCTCCGGACGAACTTCCAATTTGGGTCTCGTAACACTTCTACAAGATTGCATCAGAAAGTTCAAGCACGATGTCCAGTACAGAAATGACATCAGATTTCTTAAGATTTGGCTCCTATATATGGATGCTAGTAAGGATTTTAATAATGTGTTCAAAGAAATGCTGGATAGTAATGTATGCGCCAACCAGTCTTCACTTTATGTATGGTCTGCATATTTTTTTGAATCCAAAGGGCGATTGCATGACGCTCACACGGCTTATCAGCTTGGCATCTCCAGAAATGCAGAGCCAATTGAGTGGCTGAAGAAAGCGCATAAATTGTTCCTCAATAGAATTTCTGAAATAGCAACTGTTGCTCCACGTCAGAAGATTGATGATAACGAATCCATGATAGTTGGAAATGGCGCCATTAATCCATGGAGCAACTTAATCATGGATGATCTATTCAAGAGGACAAATTCTTTCATCACTAAATTTGAAGGGTATCATTCAAGTAACAAAGCTTACGCTGGAAAAATTGCCTTATCTTCTTTGAAGAATTCATCAAGGAATAAAATTGTAGAGATAGGTGGAAAGAAGTATCAAATCAAGGGTTGTGCCGGACAAGGTGGTTTCGCTCAAGTATACAAGGCATATGTTAATAGTAATCCCGATGAAGTTGTCGCTCTGAAGATCCAAAAACCAGCATTCCCTTGGGAATTTTACATCTATCGTCTGCTAGATCAACGTATCTTAGAGAGTAAAAGACCAAGCTATGGCTTTGCTCATAGAATTCATATCTATTCTGACTGTAGCATACTCATCTGTGACTATTTAGCGCATGGGACATTACAGGATGTCGTAAATTCATATTTGGTCCTGGGGAAATCTATGGAAGAAGTGCTGTGCATTTACTACACTATAGAAATGCTACATATGCTTGAGAAATTGCATGATGTTGGCATAATTCATGGTGATTTCAAGCCAGATAACCTGCTTATTCGCTATGCTAGTGGTGACCTTAAAGAAGACGAGTTTTTGAACAGAAGTGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGAATTGATCTGCGTCTCTTTCCGGATAACACAGTATTTAATGGAGACTGCAGAACTTCTGGGTTTCGTTGCATTGAGATGCAAGAGAAAAGAACATGGAAATTTCAGGTAGACGCATATGGCCTTTGTGCTGTTGTCCACTTGATGTTGCATAATACTTATATGGAGATTGTCAAAAACGAATCATCCGATGGGAGCTACGTTTATCTACCCAGACTGCCATTTAAACGTTACTGGAACGTTGAGCTGTGGAAGACTTTCTTTACCAAGATGTTAAACCAATACCCTGGCAATGATGATAGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCGAGGACTATATGGGCTCCAATCCGCAGCTTATAAAGAAGCTAAAGGAGTTACTCGTGAAGCAAAGGGCTTCCTTGTGCTCTGCTTAG	2040	0.4294	MIPLRVTQLRRAVLRLATPHTTSSSSSGGGGGRPFLHGHFLPLLIFPRQQESIFLLLVIPQPQRSLPLHHRLRFNFIHSVQPSLSWERSRWKQDIFVAEGSKLEIKNREGNGEASPGSGGPLKIVERTREGAQLRKTQTFPIFSSTSTMTKIDNFLISRVNEDAQDPILPYLRSIREALEDSISGRTSNLGLVTLLQDCIRKFKHDVQYRNDIRFLKIWLLYMDASKDFNNVFKEMLDSNVCANQSSLYVWSAYFFESKGRLHDAHTAYQLGISRNAEPIEWLKKAHKLFLNRISEIATVAPRQKIDDNESMIVGNGAINPWSNLIMDDLFKRTNSFITKFEGYHSSNKAYAGKIALSSLKNSSRNKIVEIGGKKYQIKGCAGQGGFAQVYKAYVNSNPDEVVALKIQKPAFPWEFYIYRLLDQRILESKRPSYGFAHRIHIYSDCSILICDYLAHGTLQDVVNSYLVLGKSMEEVLCIYYTIEMLHMLEKLHDVGIIHGDFKPDNLLIRYASGDLKEDEFLNRSGPWRDQGLCLVDWGRGIDLRLFPDNTVFNGDCRTSGFRCIEMQEKRTWKFQVDAYGLCAVVHLMLHNTYMEIVKNESSDGSYVYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDRRLLQELRKSFEDYMGSNPQLIKKLKELLVKQRASLCSA	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0847	679	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	374	676	-	-
	Lele11g0847	679	ProSiteProfiles	BUB1 N-terminal domain profile.	155	311	IPR013212	-
	Lele11g0847	679	SUPERFAMILY	Protein kinase-like (PK-like)	373	653	IPR011009	-
	Lele11g0847	679	Gene3D	Transferase(Phosphotransferase) domain 1	373	677	-	-
	Lele11g0847	679	SMART	serkin_6	376	655	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0847	679	Pfam	Mad3/BUB1 homology region 1	160	273	IPR013212	-
	Lele11g0847	679	Pfam	Protein kinase domain	378	593	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0847	679	SMART	mad3_bub1_i	149	273	IPR013212	-
	Lele11g0847	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	497	509	IPR008271	GO:0004672\|GO:0006468
	Lele11g0847	679	Gene3D	-	157	310	-	-
	Lele11g0847	679	ProSiteProfiles	Protein kinase domain profile.	376	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0847	679	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	316	673	IPR015661	GO:0007094

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0847	Lele-ChrLele11	8489383	8496430	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0847	374	521	CBL-interacting serine-threonine protein kinases	AT5G45820	29.747	7.77e-07	50.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Lele11g0847		Pkinase	4.4e-11	CL0016