Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0846 ATGAGCAGCGTCTGCGCTGATCAGCACAAGTTCCTTCCCTTCTCCCTCAAGAAATCCCTCCTTGATATCCCTCCCCGGAAGCTCCTCACTCGCCGTTCCGCCGCAGCTGCCGCCATCCACGACCCCGACGAGGCTTTCCTTCACAAGTTTCTCCCTCGTAACAACCTCAACGCCGACTCAGATGACGATGACTCTGATCCCTATTCATCTGACAATTTCCGCATGTACGAGTTCAAGGTCCGCCGCTGCAGTCGCAGCCGCAGCCACGACTGGACCGACTGTCCGTTCGCTCACCCTGGTGAGAAGGCTCGCCGTCGTGACCCCCGGCGGTTTCACTACTCCGGTACTGTATGTCCCGAGTATCGCCGCGGTGGGTGCAGCCGCGGGGATAGTTGCGAGTTTGCTCACGGCGTGTTCGAGTGTTGGCTTCATCCTGCAAGGTACAGAACTGAGGCTTGTAAAGATGGGAAGAATTGTAAGCGGAAGGTTTGTTTCTTCGCTCATACACCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCAGTCCCATAATTCTTCTTCATCGGCCGACCACCATGTTTCCTGCAAGAATCATAACAAATTCTTGAACCCTACCTCTGGATCTTACAATTGCTGCTTGTTCTGTTATCATCGCGCCGCTGATGGTACCACTTCGTCTCCAACATCCACGCTGTTTGGGATGTCCCATATGTCACCGCCACTCTCGCCGTCGTCGTCCCCTGTTTCACCGACTCTTTCGCCGGTGAAACGCCGATCGACTGCGAACGGAGTGTTGCCAATCTCTCGATATTGTGACAGACTTGCAGGATGCGAGAAATCATCTGGCAGGTTGATGAATAATCATGGACTTGCGAGCTATAAAGATGCTCTCACTGAATTAATGAACTCCTTGGAGGGTCTGAATTTCATTGAAGCCAATGCTTCGCCTGTTTCTGCAACAAAAGCCCCAAATCTTCCGTGGCTTGATATGTCTCTGATTACCTGTGAGGACCAGCAGAACCAGTTCATTCTTTCACCGGCAACTTCTTTTAGCTGTGAAGATCAGCAACAACAACAACAACAGTTCATTCTTTCGCCTTCCGCTCATAATACTCCAACATCATCATCTTCTGTTTCTTCATCAAGCTTCTCCAATGGGAAATTATATCCAAACAGCGCATTTCTCAGCAGTAATGAGAGCAAGAATCGCAGCAGCTAA 1218 0.5066 MSSVCADQHKFLPFSLKKSLLDIPPRKLLTRRSAAAAAIHDPDEAFLHKFLPRNNLNADSDDDDSDPYSSDNFRMYEFKVRRCSRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSQSHNSSSSADHHVSCKNHNKFLNPTSGSYNCCLFCYHRAADGTTSSPTSTLFGMSHMSPPLSPSSSPVSPTLSPVKRRSTANGVLPISRYCDRLAGCEKSSGRLMNNHGLASYKDALTELMNSLEGLNFIEANASPVSATKAPNLPWLDMSLITCEDQQNQFILSPATSFSCEDQQQQQQQFILSPSAHNTPTSSSSVSSSSFSNGKLYPNSAFLSSNESKNRSS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0846 405 ProSiteProfiles Zinc finger C3H1-type profile. 113 139 IPR000571 GO:0046872
Lele11g0846 405 PANTHER UNKEMPT FAMILY MEMBER 38 391 IPR045234 -
Lele11g0846 405 Gene3D - 112 175 - -
Lele11g0846 405 SMART c3hfinal6 147 170 IPR000571 GO:0046872
Lele11g0846 405 SMART c3hfinal6 112 138 IPR000571 GO:0046872
Lele11g0846 405 MobiDBLite consensus disorder prediction 365 405 - -
Lele11g0846 405 SUPERFAMILY CCCH zinc finger 111 141 IPR036855 GO:0046872
Lele11g0846 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 117 137 IPR000571 GO:0046872
Lele11g0846 405 FunFam Zinc finger CCCH domain-containing protein 66 70 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0846 Lele-ChrLele11 8480764 8482217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0846 62 176 C2H2 Transcription Factor Family AT5G12850 65.217 4.35e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele11g0846 zf-CCCH 1.1e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0846 11 8480764 8482217 Lele11g0846 11 8480764 8482217 ECH
Lele09g0839 09 6652480 6653742 Lele11g0846 11 8480764 8482217 hybridization
Lele10g0765 10 5950522 5951835 Lele11g0846 11 8480764 8482217 hybridization