Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0838 ATGCTCGCGGCGTCACCTCTTAGAAGCACAAATGATGAAGAAGGACAAGGAGAGATGGAGAGATTTACGATGGAGGTTCATGAATTCGCTGACCTCTCCGATGGAAATTTATTGGAAAGCATCAACTTCGACGATATCTTCGTCGGCATCAACGACGGAGATGTCTTGCCGGATTTGGAAATGGACCCCGAGATCTTTGCGAACTTCTCCCTCAGCGCCGGCGAGGACTCCGAGATGGCCACGTCATCGGACTCGGTGGAAAACGTCGATAATATTAATAAAGTTGACCAGAATATTATAACGCCGTTGACAACGACGAAGAAAGAAGAAGAGGACGACAAAGTGTGGTCGGATTCGGGTTCCGGTTCGGGTTCGAATTCCAGAGGGGAGATAGTGAGAAAAAGGGATGAATCCGCGGTGGTTAAGCCGTTGTCTCAGAAGGGAGCTGACAAGGGAAGAAAATCTTCAGCCGAATCAAAGAATTCGCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACTCCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAACTAGGAGTGGATAAGGCGGTGCCTTCGAGAATTCTGGAAATTATGGGAATTGATTGTCTCACTCGCCATAACATAGCCAGCCATCTCCAAAAATACCGATCCCACAGGAAACATCTAATGGCACGTGAAGCAGAAGCAGCGAATTGGAGTAAAAGAAGACAATGTTATGGAATAGGAGGAGGAGGAGGAGACAAGAGAGAGGGAAGCCCTTGGCTGGCTGTAGCACCCACGATTGGCTTCCCTCCGGTGACGCCGCCGCCAATGCAGCATTTCAGAGCCTTACATGTGTGGGGACATCCCACCATGGACCACTCCTTCATGCCATTGTGGCCTAAGCATCTCTCTTCACACTCCACTTCGCGGCTGCCCCTTGCTTGGGCGGGGCCCACTCCTCCACCCCCTGACCCTTCCTATTGGCACCAACCGGCTCCCAATGCACTAACGCCAGGAACACCTTGCTTTCCTCAGCCTCTGACTACCACGAGATTTTCCTCTCCACCTGTCCCGGGTATCCCACCCCACCACCATGCCATGTACAAAGTAGATCCCGGCATCGGCGTCCCCACCACCGGCCAACCCAATCCTCGTCCACTCGTTGATTTTCATCCTTCAAAGGAGAGTGTAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCACTTCCTCTAGGGCTTAAAGCTCCGGCGCTTGACAGTGTCATGGGTGAATTACACAGACAAGGAATTCCAAAAATCCCACCCTCTTGTGCTTGA 1317 0.5125 MLAASPLRSTNDEEGQGEMERFTMEVHEFADLSDGNLLESINFDDIFVGINDGDVLPDLEMDPEIFANFSLSAGEDSEMATSSDSVENVDNINKVDQNIITPLTTTKKEEEDDKVWSDSGSGSGSNSRGEIVRKRDESAVVKPLSQKGADKGRKSSAESKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLMAREAEAANWSKRRQCYGIGGGGGDKREGSPWLAVAPTIGFPPVTPPPMQHFRALHVWGHPTMDHSFMPLWPKHLSSHSTSRLPLAWAGPTPPPPDPSYWHQPAPNALTPGTPCFPQPLTTTRFSSPPVPGIPPHHHAMYKVDPGIGVPTTGQPNPRPLVDFHPSKESVDAAIGDVLSKPWLPLPLGLKAPALDSVMGELHRQGIPKIPPSCA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0838 438 SUPERFAMILY Homeodomain-like 165 224 IPR009057 -
Lele11g0838 438 MobiDBLite consensus disorder prediction 129 169 - -
Lele11g0838 438 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 167 221 IPR006447 GO:0003677
Lele11g0838 438 Gene3D - 164 225 - -
Lele11g0838 438 FunFam Two-component response regulator 163 226 - -
Lele11g0838 438 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 437 IPR044825 GO:0003700|GO:0045893
Lele11g0838 438 MobiDBLite consensus disorder prediction 103 169 - -
Lele11g0838 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 223 IPR017930 -
Lele11g0838 438 Pfam Myb-like DNA-binding domain 170 219 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0838 Lele-ChrLele11 8430795 8434355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0838 53 438 G2-like Transcription Factor Family AT2G20570 41.606 3.82e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele11g0838 Myb_DNA-binding 5.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0838 11 8430795 8434355 Lele11g0838 11 8430795 8434355 ECH
Lele09g0831 09 6603869 6607766 Lele11g0838 11 8430795 8434355 hybridization
Lele10g0758 10 5886221 5890047 Lele11g0838 11 8430795 8434355 hybridization