Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0835 ATGACTCAGTGCAATGATTCTGAAAATAATACCATCGTCGACAAACGCAAAGATAGCTTCATTACAACAACATGCCCTTCCTGTGGACATCATATCAAATCCCACGAACAGGCTGGCATCCATGACTTGCCTGGCCTGCCGGCCGGAGTGAAGTTTGATCCGACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTTCGATCTGATATTCATAAGCTTCATCCATTGATTGATGAGTTTATACCTACTCTTGAAGGCGAGAATGGAATCTGCTATACTCATCCTGAGAAGCTTCCAGGAGTAAGCAAAGATGGTCTGGTGCGCCATTTTTTTCACAGGCCGTCGAAAGCATACACGACAGGAACAAGGAAAAGGAGGAAGGTACACACTGAGGACGTGGACGGTAGCGAGACACGTTGGCACAAGACAGGAAAAACGAGGCCAGTGTCTCTGAGTGGGAAGCTAATAGGTTACAAGAAGATTCTGGTGCTTTACACAAACTATGGGAAACAAAGAAAACCAGAGAAGACGAACTGGGTAATGCACCAGTACCACCTTGGATATAACGAAGAGGAGAAAGAAGGAGAATTAGTGGTTTCCAAGGTTTTCTATCAAACACAACCTCGGCAATGTGGTTCCTTGCTCATGAAAGATCAGTCAATGAATCCTGCAAAACTCAAAGCTCATCATCAGGCCATGTACGAAGCTGCAGCTGCAAACAATCATAAGAACAATAATAATAATGGGTTTGTTCATGAGTTCTATGGTTCTTCATTCTTGTCGTTCGATCAAGGTAACAACCACAACAGGTCTAGTAATTCTCAAGGGATCTCCCATTTTCCTGTTCAGGATGGTTCTTCTTTCAATATTCCTTGA 879 0.4323 MTQCNDSENNTIVDKRKDSFITTTCPSCGHHIKSHEQAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHTEDVDGSETRWHKTGKTRPVSLSGKLIGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGYNEEEKEGELVVSKVFYQTQPRQCGSLLMKDQSMNPAKLKAHHQAMYEAAAANNHKNNNNNGFVHEFYGSSFLSFDQGNNHNRSSNSQGISHFPVQDGSSFNIP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0835 292 ProSiteProfiles NAC domain profile. 46 206 IPR003441 GO:0003677|GO:0006355
Lele11g0835 292 Pfam No apical meristem (NAM) protein 47 187 IPR003441 GO:0003677|GO:0006355
Lele11g0835 292 MobiDBLite consensus disorder prediction 267 292 - -
Lele11g0835 292 Gene3D NAC domain 55 210 IPR036093 GO:0003677|GO:0006355
Lele11g0835 292 SUPERFAMILY NAC domain 40 206 IPR036093 GO:0003677|GO:0006355
Lele11g0835 292 FunFam NAC domain-containing protein 73 55 210 - -
Lele11g0835 292 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 16 262 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0835 Lele-ChrLele11 8398452 8400234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0835 1 213 NAC Transcription Factor Family AT4G28500 75.221 1.70e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele11g0835 NAM 7.4e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0835 11 8398452 8400234 Lele11g0835 11 8398452 8400234 ECH
Lele09g0828 09 6577546 6579284 Lele11g0835 11 8398452 8400234 hybridization
Lele10g0753 10 5797965 5799752 Lele11g0835 11 8398452 8400234 hybridization