Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0834 ATGGGAGAGGGTAGAGAGAATATTCTAAGGCCAGGAAAGCAAAAGTCAGCCCACAAGGTTGAGATGCTTCTGCAACAAAAGATGGATGATGCAGAAATTTCAAGTGGTTTTCCTCGTCATCATCAGAACCCAGAATCTAGTAACAACAACAATAATCCTCCTGTTTTGAAGAGAAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAGGTTATAGCTTTATCACCCCAGACTCTGATGGCGACAAACAGATTCTTGTGTGAAATCTGTGGGAAGGGATTTCAAAGGGATCAGAATCTGCAGCTGCATAGAAGAGGACACAATCTTCCGTGGAAGCTGAAGCAGAGAACAGGCAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCCGAGAAGACATGTGTCCACCATGATCCTTCAAGGGCTCTGGGAGACTTAACAGGAATAAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCAAAGAGATATGCTGTCCAATCTGACTGGAAAGCTCACTCTAAGACCTGTGGTACCAGAGAATACAAATGTGATTGTGGCACTATCTTTTCACGGAGAGACAGTTTCATAACTCACAGGGCATTCTGCGATGCGTTAGCAGAAGAGACAGCAAGAGTGAATGCAGCATCTACAGTGAACAACTCCTTACTGGGTTACAACATTGTCATGGGAAATTCCCAACAAGGGCCTGCTGCGGCTGCTGCTGGCATAAGCATGATGACTACAACACATTTTCCTTCGATTTTCAAGCAAATTTCAAACACTACTGCTACTTCTGAAACAAATCATCAAACACCTAATGGGCTATCTCTAGGGATGGGTCCAACTCATCATGAAAGAATGGCCAATAATTTGAACTGTAATAACAACAATAACATGTTTGAGATTCATCATCAACTTGGATCAGTCGTCACGAGCTCATCATCATCAGGATCAATAGTATTCGGGAATAACAACACGCTTGTTTCATGCTCAAATCCGCAGCTGAATTGGGTGTTTGAAAGTAATAATAATAAGAATGATGTTCATCATCATCATCATCAAGATCACCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAACATCAGCAATCCCATCAAACATTCCCGGCGAACATGTCGGCGACAGCTTTGTTGCAGAAAGCTGCTCAAATCGGGGCAACTTCAACGGACACGTCATTCCTGGGAAGCTTAGGGTTGAAATGCAGCAACAGTACTCAAGAACAAGAAGGGAACAAATTTTGCGGGATGTATGGTTCAGGTTCAGTACTGGTATCTAGCATGGGAAGCGAGACGACAGAGAACCCGGCAAAACGGAGGAAGATAGGGCAGAAAGAAGAGAATAATGGAGAGGGAGAGCAAACTAGGGATTTTCTGGGTGTGGGAGTAGAATCCATTTGCCAAGCTACTCCAATCAACGGATGGATTTGA 1473 0.4406 MGEGRENILRPGKQKSAHKVEMLLQQKMDDAEISSGFPRHHQNPESSNNNNNPPVLKRKRNLPGNPDPEAEVIALSPQTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASTVNNSLLGYNIVMGNSQQGPAAAAAGISMMTTTHFPSIFKQISNTTATSETNHQTPNGLSLGMGPTHHERMANNLNCNNNNNMFEIHHQLGSVVTSSSSSGSIVFGNNNTLVSCSNPQLNWVFESNNNKNDVHHHHHQDHLISVPSLYSSQHQQSHQTFPANMSATALLQKAAQIGATSTDTSFLGSLGLKCSNSTQEQEGNKFCGMYGSGSVLVSSMGSETTENPAKRRKIGQKEENNGEGEQTRDFLGVGVESICQATPINGWI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0834 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Lele11g0834 490 Gene3D Classic Zinc Finger 120 210 - -
Lele11g0834 490 MobiDBLite consensus disorder prediction 440 469 - -
Lele11g0834 490 Gene3D Classic Zinc Finger 82 109 - -
Lele11g0834 490 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lele11g0834 490 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Lele11g0834 490 MobiDBLite consensus disorder prediction 448 467 - -
Lele11g0834 490 MobiDBLite consensus disorder prediction 39 56 - -
Lele11g0834 490 FunFam protein indeterminate-domain 5, chloroplastic-like 140 219 - -
Lele11g0834 490 SMART c2h2final6 162 182 IPR013087 -
Lele11g0834 490 SMART c2h2final6 127 157 IPR013087 -
Lele11g0834 490 SMART c2h2final6 86 108 IPR013087 -
Lele11g0834 490 MobiDBLite consensus disorder prediction 1 70 - -
Lele11g0834 490 FunFam protein indeterminate-domain 12-like 65 133 - -
Lele11g0834 490 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 478 IPR031140 -
Lele11g0834 490 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0834 Lele-ChrLele11 8387396 8392279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0834 52 490 IDZ Gene Family AT1G03840 50.202 7.94e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele11g0834 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0834 11 8387396 8392279 Lele11g0834 11 8387396 8392279 ECH
Lele09g0827 09 6568340 6570841 Lele11g0834 11 8387396 8392279 hybridization
Lele10g0752 10 5787445 5789943 Lele11g0834 11 8387396 8392279 hybridization