LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0819	ATGGCGCAATTGCCTCCCAAGATCCCAAACATGGCGCCGAATTGGCCTGATTTTTCTCATCATCAGAATATGCCTTCCCTTGCAAGTTTGTCGCCAAATAATGTGGCCACCACCAACGCTGCGGCGACCACCACCGCCAACACCACTCATCAGAATCCTTCTTGGGTGGACGAATTCCTTGACTTCTCGTCGGCCCGACGAGGGGCTCACCGGCGATCCGTGAGCGACTCTATTGCCTTCATTGAGGCTCCAATGCTGGACGATTGTCGTGGTAACTCCGGCGTGATTCATCCGAGGTCGTCTGAGTTCGATAGATTGGATGATGACCAATTCATGTCTATGTTCACTGACGATTTATCCGGCGCTTCCATGCCTCCCACCTTGTCGTCCTCCAATCCTTCAAGCCCTTCCGATCATAACAGCATTAATGATGAGAAAGAAACCGGCCAAAACCAGAATCAACAGAAGGAGAAGAAAGAGCATGATCAGCGGCAGAAACAAGTGAAGAATGAATCAGATGAGGTTGAAAGCCAACATGAACAGGAAACTCAAGCTCCAAATAACACCAACACAACTTCTTCAGCTGACAAAATTACTGACCCTAAGAGAGTGAAAAGAATCCTGGCAAACAGACAATCTGCACAAAGGTCACGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTTCTATCTCCAAGAGTTGCGTTTTTAGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGACAAGATCTTTAAGGATGCTCATCAAGAGGCTTTGAAGAGGGAGATAGAGAGACTGAGGCAAGTATATCACCATCAGAACCTCAAGAAAATGGAAAATAATGCTGCAGGGCCACCGTCATCACCTCCATGTTCATCTCCAACACCAAACACAGAACGTAGGGCTAAGACTACAGAAAAGGAACAACTTCTCAATGTCTGA	1017	0.468	MAQLPPKIPNMAPNWPDFSHHQNMPSLASLSPNNVATTNAAATTTANTTHQNPSWVDEFLDFSSARRGAHRRSVSDSIAFIEAPMLDDCRGNSGVIHPRSSEFDRLDDDQFMSMFTDDLSGASMPPTLSSSNPSSPSDHNSINDEKETGQNQNQQKEKKEHDQRQKQVKNESDEVESQHEQETQAPNNTNTTSSADKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHHQNLKKMENNAAGPPSSPPCSSPTPNTERRAKTTEKEQLLNV	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0819	338	Gene3D	-	201	302	-	-
	Lele11g0819	338	CDD	bZIP_plant_RF2	203	253	IPR044759	GO:0003700\|GO:0006355
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	116	139	-	-
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	116	203	-	-
	Lele11g0819	338	PANTHER	BASIC LEUCINE ZIPPER 34	1	324	-	-
	Lele11g0819	338	SUPERFAMILY	Leucine zipper domain	202	256	IPR046347	GO:0003700\|GO:0006355
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	16	32	-	-
	Lele11g0819	338	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	205	220	IPR004827	GO:0003700\|GO:0006355
	Lele11g0819	338	Coils	Coil	139	185	-	-
	Lele11g0819	338	Coils	Coil	281	301	-	-
	Lele11g0819	338	SMART	brlzneu	198	262	IPR004827	GO:0003700\|GO:0006355
	Lele11g0819	338	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	200	252	IPR004827	GO:0003700\|GO:0006355
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	140	180	-	-
	Lele11g0819	338	Pfam	bZIP transcription factor	202	246	IPR004827	GO:0003700\|GO:0006355
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	300	338	-	-
	Lele11g0819	338	MobiDBLite	consensus disorder prediction	181	197	-	-
	Lele11g0819	338	FunFam	Basic leucine zipper 61	201	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0819	Lele-ChrLele11	8295750	8298055	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0819	1	279	bZIP Transcription Factor Family	AT3G58120	57.516	1.59e-97	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele11g0819		bZIP_1	4e-09	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele11g0819	11	8295750	8298055	Lele11g0819	11	8295750	8298055	ECH
	Lele09g0815	09	6484076	6487013	Lele11g0819	11	8295750	8298055	hybridization
	Lele10g0743	10	5721475	5723825	Lele11g0819	11	8295750	8298055	hybridization