Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0811 ATGGAAGGTTTTGATTGGAGTTCACCAGCCGTTTGTGGAAATGCCTCAGAGAAAAGCAGTCATGGTTTTGCTGTTAATTCTGGTGTTATAGAAACTGGGTTTGCTTCATCTTCTTCTCTGGTGTTGGATAACCAGATGGTTCAAGAACGAAACAAGGGCTTGTCATCCTCTGAGAGAAGCGTCGAAGCTTTGAAGAACCATAGCGAGGCAGAACGAAGAAGAAGAGCAAGGATCAATGCTCATCTTGATACTCTTCGCACAGTTATTCCAGGTGCTAACAAGATGGACAAAGCATCGTTACTTGGTGAGGTGATCAGACATTTGAAAGAGCTAAAAGGGAATGCAGCAGAAGCTTGTGAAGGTTTAATGGTACCAAAGGACAGTGATGAGATAAGAGTTGAAGAGGAAGAAGGTGGCTCTAATGGTTTTCCTTATTCAATCAGGGCTTCTCTGAGTTGTGAGTATAAACCTGGGTTGTTGTCCGATATAAGGCAAGAACTTGATGCTCTTCATCTGATTATAATGAAGGCAGAGATGGCGACATTGGGAGGGAGGATGAAGAATGTGTTTGTGATAATAAGCTGTGAAGAGAATAACATCAACATTGAAGATTCTGAGTATAGACAGTTTCTTGCTGGTTCTGTTCATCAAGCTCTTAAGTCTGTGGTTGATAGATTCTCTGCTTCACAGGATCTCTTGGGAATCAGAAAGAGGAGGAGGATTTCTGTTCTCTCTCTCTCTCTCTTTCCGTCAATCATGGCTCAGGAAGAGAAGAAATCTGACATTAAGAAAATTGGAGACGAAAGCGAACAGATTCCCCCCAGGAAGACCGCAGCTTCTTATAGGGCTGATGAATGGGATGTGAACAAATGGGCATGGGAAGGGACATTGAAAGTCATTAGCAAGGAAGAACTATGCATTATAAAACTTGAAGATAGGAAAACAGGTGAACTATATGCTCGGGCATTTTTAAGAAATGGAGAGCCGCATCCTGTGGAGCCTGTCATTGACAGCAGCAGATATTTTGTTCTTCGCATAGAAGAGAACATAGGAGTGTACCTTTTCTCTTTTGGCATAATAGTTGAAAGACTTGTGAGCTTTGACTCCACAAAATCCAATGCGATATTTCTCTACGCTCCTTTGAATGCACAAGGAAACAGAAAGCTAGATGAAAAAGACAAAACTGTGGAAGCGGACGGCAATATGCTTTGTGGTAGCCTACGTAATAACGTCTTGTTGTTCAAACAGGAGGATCATAACCTTAATCATAATTCCCGCGAGGTTATTATGGTCATGATGGAAGTAAAAGGCATAACTTGGGTTGGGAATATATACCAGAATTTTGAAAATATGTGCCTGGAAGCAGAAGAAATGATATATGAGGATACTGTTAAATACTTGGAGAATCAGGTGCAGACTGTTGGGGAAAGTGTTAAGAAATTCTATGTAGATGTCATACAAGATTTGCTGCCCCCTTCATGTGATTCAGATGGAAAAGTGTCTGATTCTCCTATGGATCAAGACACTATTATTGACATCAATAAGAAGACAATTATGGGTCCCAAGGAAAGACCTTCAAAGGTTGATATCAAGCAAATAAGCAAGGATTTAAGGATCAAGCATGATGTTGATGTGACCTGCGCTTCGTCTTATGAAAAATCTCATGACGCTGATGTTTTATTGACATCAGCTCCTGGCAACTCTTTCAAAGTAAACAGATTTAATTGCCATGCGAGACAACGTGTGAGGAGTACAAATATCCGACCAAGCCTTGCTCTAACCAGGACAGTGGATGGAATTACTTCAACTGAAACAGAGACAGAAACATGCAGGTCACAGTCCAGTAATATTTTAAATGAAATTCATGAAGTGCCTTTTTGTCCTGCAGCCACCATTTCAAATCAATCTTCGGCTGAAGTAAAAATGTCAGACTTGGTTTCAGATTGTTTTAGTGAAAATGGAAGTTCTGAAGAGATCCCTGATCTTCCAATATTTGATAATAAACCTGCTGATGAAAAAGAGATGAATGTTAGCCCTTCTTCCTCTGCTGTCCAATCTGGAGAACCAAATGAGGGGTGGAATTTCGAATTTGATTTTGCGATGGAAAAGGACCCTGAAGCTATGGAAAAAGGTGATGAAATGAAGCTTTACCAATCTTGTGTAATGGTGAGTGGCGATGAGCTCAGATTAATCCCCATGGCAGAGGATAATCCAAAGACTAACAAGAAAAAGATGAGGGGAGTCTTTAATTTGGGTAAGAAGTCTGGGAGCAAGCAAGAGTATGTGCAGCTTGCAGCATGGCATGGGAACAGAGAGAAAGGCAAAGGAAACTGTGTGGAGAATTCAAAAGCAGCTTGTTCAGAAGGGGGTCCTAAGCAACCAACTCTTGCAAATATCTCTGAATCTGAGTGGGAGGTTCTTTAA 2424 0.4105 MEGFDWSSPAVCGNASEKSSHGFAVNSGVIETGFASSSSLVLDNQMVQERNKGLSSSERSVEALKNHSEAERRRRARINAHLDTLRTVIPGANKMDKASLLGEVIRHLKELKGNAAEACEGLMVPKDSDEIRVEEEEGGSNGFPYSIRASLSCEYKPGLLSDIRQELDALHLIIMKAEMATLGGRMKNVFVIISCEENNINIEDSEYRQFLAGSVHQALKSVVDRFSASQDLLGIRKRRRISVLSLSLFPSIMAQEEKKSDIKKIGDESEQIPPRKTAASYRADEWDVNKWAWEGTLKVISKEELCIIKLEDRKTGELYARAFLRNGEPHPVEPVIDSSRYFVLRIEENIGVYLFSFGIIVERLVSFDSTKSNAIFLYAPLNAQGNRKLDEKDKTVEADGNMLCGSLRNNVLLFKQEDHNLNHNSREVIMVMMEVKGITWVGNIYQNFENMCLEAEEMIYEDTVKYLENQVQTVGESVKKFYVDVIQDLLPPSCDSDGKVSDSPMDQDTIIDINKKTIMGPKERPSKVDIKQISKDLRIKHDVDVTCASSYEKSHDADVLLTSAPGNSFKVNRFNCHARQRVRSTNIRPSLALTRTVDGITSTETETETCRSQSSNILNEIHEVPFCPAATISNQSSAEVKMSDLVSDCFSENGSSEEIPDLPIFDNKPADEKEMNVSPSSSAVQSGEPNEGWNFEFDFAMEKDPEAMEKGDEMKLYQSCVMVSGDELRLIPMAEDNPKTNKKKMRGVFNLGKKSGSKQEYVQLAAWHGNREKGKGNCVENSKAACSEGGPKQPTLANISESEWEVL 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0811 807 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 111 IPR011598 GO:0046983
Lele11g0811 807 MobiDBLite consensus disorder prediction 782 807 - -
Lele11g0811 807 Gene3D - 270 384 IPR011993 -
Lele11g0811 807 PANTHER TRANSCRIPTION FACTOR BHLH30 35 241 IPR045847 GO:0003700|GO:0006355
Lele11g0811 807 SUPERFAMILY PH domain-like 271 351 - -
Lele11g0811 807 SMART finulus 68 117 IPR011598 GO:0046983
Lele11g0811 807 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 116 IPR036638 GO:0046983
Lele11g0811 807 Pfam Protein of unknown function (DUF1681) 271 352 IPR012466 GO:0006897|GO:0016020
Lele11g0811 807 MobiDBLite consensus disorder prediction 50 72 - -
Lele11g0811 807 Pfam Helix-loop-helix DNA-binding domain 66 111 IPR011598 GO:0046983
Lele11g0811 807 Gene3D - 58 119 IPR036638 GO:0046983
Lele11g0811 807 CDD ACT_UUR-ACR-like 150 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0811 Lele-ChrLele11 8201559 8212672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0811 59 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.553 2.25e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele11g0811 DUF1681 4.6e-23 CL0266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0808 09 6405359 6414027 Lele11g0811 11 8201559 8212672 hybridization
Lele10g0734 10 5629889 5634312 Lele11g0811 11 8201559 8212672 hybridization