Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0805 ATGTTGCAATCTGGAAAGTCTGTGCGAGAACTGGGCTATGACTCTCTTGCGACTCGATTTGGTGATTCGCTGACTTGTGAACAGAACAAGCCCGATTTCAAAGAACTCGATCTTGATTCGTTCGTTTCGCCTTTGAAAATCCGCAGCTCTGGTAATGCTGGCTGCGGCAGTGGAGCTGCTGCCACTTCGAGCTCGAGCTCGAGCTCGAGCTCCTCCGGCTCTGTCACAGGCAGAAGCAACGTTCCCAAGATGCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGCGAGCTCACTGGCTATTTTGATACCAGCCCGAATACCTTAGAGAGCCTCCGGTCCGCCAATTCCAACCCGGGTCATCGGAGATCGGTTTCGGCTGGAGCCCCGTTAATCTACTCTGGCGGAAGTCATAGCAGCCCTGGGAGTAATAATTGCTCTAACAGTGCAACTTCAGGGACCAATTTATTCCCAACTGGTAATATTTGTCCTTCGAGGAAGATCCTTAAATCGGTTATGGTGTCTCGAGCTTCCAATAGAACTGATGTGTTGGGTTCTGGAACGGCTAACTATGGCCATGGTAATATAATGCGTGCTGGCGCGAAATTGAGCAATTCTGGGCACGTCGTGGATGACAATGGGGTTGGGATTCCTCAGGTTGGTGGAGCATCGGGGTCCATTAGACGAGCAATGTGTGGTTCTGATCCGGAAGAGATGAAGAAGACTGGGAATGAGTTATATAGAAGCGGTAATTTTGCGGAGGCATTGTCATTGTACGATCGTGCTATTTCGATATCGCCAAATAACGCAGCCTACCGGAGTAACCTGGCAGCGGCATTGACAGCGTTGGGGAGATTGGCTGAGGCAGCGAAGCAGTGTGAAGAGGCTGTGAAGTTGGACCCTAATTATGCTCGGGCACATCAGAGGCTGGCCTCTCTTTGCCTGCGCTTTGGATGTGTCGAACACGCCAAGCGCCACCTCTATCTCCCTGGGCAACATGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATATAAAACAATGTGCAGCTGCAAGGAAGATTGGCGATTGGAAGTTTGCACTTGAGGAATCGAATGTAGCCATTGCAGTTGGGGCAGATTTCTCACCTGAGCTTGTTGCTTGTAAGGTGGAAGCTTCCTTAAAACTCCATCAACTTAAGGATGCTGAATCCAGTCTTTCAAACATTCCGAAGTTGGAAGGTTGTCCTTTATCCTGCTCTCAAACCAAGTTTTTTGGTATGGTTGGTGAAGCCTATGTGTACTTGGTTCATGCTCAGGTTCAGATGGCCATGGGAAGATTTGAGAATGCAGTAGCATCAGCTGAAAAGGCTAAACTGTTAGATCACAGCAATGTAGAAGTTGAGAGGGTTCTAAATACTGTGAAAATGGTAGCAAGAGCTCGCTCAAAGGGCAATGATCTCTTTAGCTCCGGCAAATTTTCTGAAGCTTGTTCTGCTTATGGGGAAGGCCTCAAATATGACAGCTACAACTATGTTCTGTATTGTAATAGAGCTGTTTGTTGGTCTAAACTTGGACTATGGGAAAAATCTGTTGAGGATTGTAACCAAGCTCTCAACATTCAACCAAATTACACCAAGGCCCTCTTTCGCAGGGCTGCATCAAATGCAAAGCTTGAAAGATGGGCTGAAGTTGTGAAAGATTATGAGACCTTAAAACAAGAACTCCCAGGAGACAATGGAGTTGTTGAATCTCTTCGTAAGGCTCAGCTAGCTTTAATAAAATCTCGCGGAGAGGACCATGCTGGAAAGCTTGAAGTTGAAGTTGGAGCCGTCTCTTCGTTGGAAGAATTTAAAGCTGCTATTGCTTCTGCTTGCATCTCAGTAGTTCATTTCAAAGAGGCATCGGATGAACTATGCGGAGAAATATCCCCATTCATAAATATGCTGTGCGTCAGATACCCATCTGTTAAATTTATCAAGGTTGATGTGGAGGAGTGTTTAGCCATAGCAAGAGCCGAGAGCATAAGAACTGTCCCAACGTTCAAAATTTATAAAAATGGAACGAAGATGAAGGAGATGATTCGGCCAACGCACAAGTTCTTAGAAGAGTCAGTAAGAAGCTGTAGTTCCCTATGA 2130 0.4662 MLQSGKSVRELGYDSLATRFGDSLTCEQNKPDFKELDLDSFVSPLKIRSSGNAGCGSGAAATSSSSSSSSSSGSVTGRSNVPKMPRRPDGKPNHHSGELTGYFDTSPNTLESLRSANSNPGHRRSVSAGAPLIYSGGSHSSPGSNNCSNSATSGTNLFPTGNICPSRKILKSVMVSRASNRTDVLGSGTANYGHGNIMRAGAKLSNSGHVVDDNGVGIPQVGGASGSIRRAMCGSDPEEMKKTGNELYRSGNFAEALSLYDRAISISPNNAAYRSNLAAALTALGRLAEAAKQCEEAVKLDPNYARAHQRLASLCLRFGCVEHAKRHLYLPGQHVDQSELQKLRLLEKHIKQCAAARKIGDWKFALEESNVAIAVGADFSPELVACKVEASLKLHQLKDAESSLSNIPKLEGCPLSCSQTKFFGMVGEAYVYLVHAQVQMAMGRFENAVASAEKAKLLDHSNVEVERVLNTVKMVARARSKGNDLFSSGKFSEACSAYGEGLKYDSYNYVLYCNRAVCWSKLGLWEKSVEDCNQALNIQPNYTKALFRRAASNAKLERWAEVVKDYETLKQELPGDNGVVESLRKAQLALIKSRGEDHAGKLEVEVGAVSSLEEFKAAIASACISVVHFKEASDELCGEISPFINMLCVRYPSVKFIKVDVEECLAIARAESIRTVPTFKIYKNGTKMKEMIRPTHKFLEESVRSCSSL 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0805 709 MobiDBLite consensus disorder prediction 99 124 - -
Lele11g0805 709 SMART tpr_5 271 304 IPR019734 GO:0005515
Lele11g0805 709 SMART tpr_5 509 542 IPR019734 GO:0005515
Lele11g0805 709 SMART tpr_5 429 462 IPR019734 GO:0005515
Lele11g0805 709 SMART tpr_5 475 508 IPR019734 GO:0005515
Lele11g0805 709 SMART tpr_5 543 576 IPR019734 GO:0005515
Lele11g0805 709 SMART tpr_5 237 270 IPR019734 GO:0005515
Lele11g0805 709 Gene3D Glutaredoxin 595 706 - -
Lele11g0805 709 SUPERFAMILY TPR-like 236 463 IPR011990 GO:0005515
Lele11g0805 709 Pfam Tetratricopeptide repeat 244 304 - -
Lele11g0805 709 SUPERFAMILY TPR-like 474 587 IPR011990 GO:0005515
Lele11g0805 709 MobiDBLite consensus disorder prediction 48 149 - -
Lele11g0805 709 FunFam TPR repeat-containing thioredoxin TTL4 601 707 - -
Lele11g0805 709 Pfam Tetratricopeptide repeat 430 459 IPR019734 GO:0005515
Lele11g0805 709 Pfam Thioredoxin 612 693 IPR013766 -
Lele11g0805 709 ProSiteProfiles TPR repeat profile. 271 304 IPR019734 GO:0005515
Lele11g0805 709 SUPERFAMILY Thioredoxin-like 609 694 IPR036249 -
Lele11g0805 709 Gene3D Tetratricopeptide repeat domain 235 594 IPR011990 GO:0005515
Lele11g0805 709 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Lele11g0805 709 CDD TRX_family 613 694 - -
Lele11g0805 709 MobiDBLite consensus disorder prediction 55 79 - -
Lele11g0805 709 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 704 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0805 Lele-ChrLele11 8141118 8144201 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0774 29 5013879 5018055 Lele11g0805 11 8141118 8144201 CCT
Lele30g0629 30 10979880 10984089 Lele11g0805 11 8141118 8144201 CCT
Lele11g0805 11 8141118 8144201 Lele11g0805 11 8141118 8144201 ECH
Lele09g0800 09 6339803 6342862 Lele11g0805 11 8141118 8144201 hybridization
Lele10g0729 10 5572375 5575242 Lele11g0805 11 8141118 8144201 hybridization