LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0787	ATGTCAGCTACTGTTGTCGAGGGGAATGATGCAGTCACTGGCCACATAATATCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACAGACTATCAGTTACATGGCAGAACGTGTTGTTGGCACCGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAAACACTGGCTATAAAGAAGGTCTTGCAGGATAGGCGTTACAAGAATCGTGAACTGCAGTTAATGCGTTTGATGGATCATCCAAATGTAATTTCTCTGAAGCACTGTTTCTTCTCTACAACTAGCAGAGATGAATTTTTTCTGAACTTGGTTATGGAATATGTACCTGAGACAATGTACCGAGTTCTAAAACACTACAGTAGTATGAACCAGAGGATGCCCCTCATCTATGTGAAACTTTACACTTACCAAATCTTTAGGGGACTGGCATATATCCATACTGTACCTGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCCTCTCACACATGAAGTGAAGCTTTGTGATTTTGGGAGTGCAAAAGTTTTGGTAAAGGGTGAATCAAACATTTCCTATATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCGACAGAATATACAGCTTCAATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATCAAGGTTTTTCATAAGCGAATGCCTCCTGAAGCGATTGATCTTGCTTCAAGGCTTCTCCAATATTCACCTAGTCTTCGATGTACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGTGAACCTAATGCCAGACTACCTAATGGTTGCCCGCTGCCCCCGCTTTTCAACTTTAAACAGGAACTGTCCGGAGCATCACCTGAATTGATAAGTAAGCTCATCCCAGAGCATGTTAGGCGGCAGAGTATTCTGGGCTTCCATATTCCACCTGATACATATATGTAA	1035	0.429	MSATVVEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETLAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDEFFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHEVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGCPLPPLFNFKQELSGASPELISKLIPEHVRRQSILGFHIPPDTYM	344

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0787	344	CDD	STKc_GSK3	29	289	IPR039192	-
	Lele11g0787	344	FunFam	Mitogen-activated protein kinase	114	256	-	-
	Lele11g0787	344	Gene3D	Phosphorylase Kinase; domain 1	19	113	-	-
	Lele11g0787	344	FunFam	Glycogen synthase kinase-3 beta	18	113	-	-
	Lele11g0787	344	ProSiteProfiles	Protein kinase domain profile.	34	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0787	344	Pfam	Protein kinase domain	34	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0787	344	ProSitePatterns	Protein kinases ATP-binding region signature.	40	64	IPR017441	GO:0005524
	Lele11g0787	344	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	2	250	-	-
	Lele11g0787	344	SUPERFAMILY	Protein kinase-like (PK-like)	33	313	IPR011009	-
	Lele11g0787	344	SMART	serkin_6	34	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0787	344	Gene3D	Transferase(Phosphotransferase) domain 1	114	329	-	-
	Lele11g0787	344	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	155	167	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0787	Lele-ChrLele11	7987705	7990609	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0787	40	324	MAP Kinase Gene Family	AT2G43790	32.622	1.98e-51	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lele11g0787		Pkinase	1.9e-62	CL0016