Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele11g0777 | ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAAAGTTCCGATACTATTGACAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATCCTTCCTGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAGCTGGAAGATGGAAGAACCCTAGCTGACTATAATATCCAGAAAGAGTCGACCCTCCACCTTGTCCTTCGTCTCAGGGGAGGGATGCAGATCTTTGTCAAGACTCTAACGGGAAAGACCATTACCCTTGAGGTCGAGAGCTCTGATACGATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAAGGGATTCCTTCTGACCAACAAAGACTCATCTTTGCCGGTAAACAACTCGAGGATGGTCGCACCCTTGCTGATTACAACATTCAAAAAGAATCTACCCTGCACTTGGTTCTGCGACTCCGTGGTGGTATGCAAATTTTTGTGAAGACTCTGACAGGGAAGACCATAACTTTGGAAGTTGAAAGTTCTGATACTATAGATAATGTAAAGGCCAAGATACAGGACAAGGAGGGTATCCTTCCTGATCAGCAGAGGCTTATCTTCGCTGGGAAGCAGTTGGAAGATGGACGTACCCTTGCTGATTATAACATTCAAAAGGAGTCCACACTGCACTTGGTTATGCGACTTCGCGGTGGGATGCAAATTTTTGTCAAGATATACAATTGA | 714 | 0.4608 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVMRLRGGMQIFVKIYN | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele11g0777 | 237 | FunFam | Polyubiquitin 3 | 1 | 76 | - | - | |
| Lele11g0777 | 237 | PANTHER | UBIQUITIN | 153 | 234 | - | - | |
| Lele11g0777 | 237 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Lele11g0777 | 237 | Gene3D | - | 1 | 76 | - | - | |
| Lele11g0777 | 237 | Gene3D | - | 77 | 152 | - | - | |
| Lele11g0777 | 237 | Gene3D | - | 153 | 235 | - | - | |
| Lele11g0777 | 237 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | Pfam | Ubiquitin family | 79 | 150 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | Pfam | Ubiquitin family | 155 | 226 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | ProSitePatterns | Ubiquitin domain signature. | 103 | 128 | IPR019954 | - | |
| Lele11g0777 | 237 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | SMART | ubq_7 | 77 | 148 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | SMART | ubq_7 | 153 | 224 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | SUPERFAMILY | Ubiquitin-like | 152 | 228 | IPR029071 | - | |
| Lele11g0777 | 237 | CDD | Ubl_ubiquitin | 153 | 228 | - | - | |
| Lele11g0777 | 237 | CDD | Ubl_ubiquitin | 77 | 152 | - | - | |
| Lele11g0777 | 237 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Lele11g0777 | 237 | FunFam | Polyubiquitin 3 | 77 | 152 | - | - | |
| Lele11g0777 | 237 | SUPERFAMILY | Ubiquitin-like | 76 | 152 | IPR029071 | - | |
| Lele11g0777 | 237 | ProSiteProfiles | Ubiquitin domain profile. | 77 | 152 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | FunFam | Polyubiquitin 3 | 153 | 228 | - | - | |
| Lele11g0777 | 237 | ProSiteProfiles | Ubiquitin domain profile. | 153 | 228 | IPR000626 | GO:0005515 | |
| Lele11g0777 | 237 | PRINTS | Ubiquitin signature | 108 | 128 | IPR019956 | - | |
| Lele11g0777 | 237 | PRINTS | Ubiquitin signature | 87 | 107 | IPR019956 | - | |
| Lele11g0777 | 237 | PRINTS | Ubiquitin signature | 129 | 150 | IPR019956 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele11g0777 | Lele-ChrLele11 | 7826550 | 7827263 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele11g0777 | 1 | 77 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 97.403 | 3.60e-48 | 153 |