Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0770 ATGGTTGGCCCGGAAAACACCAATTGGCTTTTCGATTATGGTTTGATTGACGATATAACTGTCCCGGATCAAGGCTTTACTATACCTGCTTCCGGGTTCAGCTGGCCGGCGGCGCACGCCTTGAATGGTGGTTCTTCGACTGTCAGTGCTGAAATTGATGCCACGTTGGGGGATACTGATGGTGTAAAAGAGCCTCGTTCAAAGAAGAGGGTTAGACCTGAATCATGTGCTGCTTCTAGTTCAAAGGCATGTCGGGAAAAGCTGAGGAGGGACAGGCTGAATGACAAGTTTATTGAATTATGCTCTATTTTGGAACCTGGAAGGCCTTCCAAAACTGACAAGGCTGCTATTCTGGTTGATGCTGTTCGAATGGTAACACAATTACGAGGTGAAGCCGAGAAGTTGAAAGACTCAAATATGAATCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAACTACGAGATGAGAAACAGAGGCTCAAGGCTGAGAAAGAAAAGTTGGAGCAGCAGTTGAAAGCTATCAATGCTCAACCTGCTTTCATGCCTCCCCCTCCTGCAATCCCCGCGGCATTTGCTGCTCAAGGCCAAGCCCCTGGCAGCAAGTTGGTCCCTTTTATTGGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCTCCAGCTGCTGTGGATACTTCACAGGACCATGTGCTCCGTCCACCAGTTGCCTAA 717 0.477 MVGPENTNWLFDYGLIDDITVPDQGFTIPASGFSWPAAHALNGGSSTVSAEIDATLGDTDGVKEPRSKKRVRPESCAASSSKACREKLRRDRLNDKFIELCSILEPGRPSKTDKAAILVDAVRMVTQLRGEAEKLKDSNMNLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAINAQPAFMPPPPAIPAAFAAQGQAPGSKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0770 238 MobiDBLite consensus disorder prediction 57 75 - -
Lele11g0770 238 FunFam Transcription factor bHLH34 68 126 - -
Lele11g0770 238 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Lele11g0770 238 PANTHER BHLH TRANSCRIPTION FACTOR 5 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele11g0770 238 SMART finulus 83 134 IPR011598 GO:0046983
Lele11g0770 238 MobiDBLite consensus disorder prediction 56 75 - -
Lele11g0770 238 CDD bHLH_AtILR3_like 82 157 - -
Lele11g0770 238 Coils Coil 125 180 - -
Lele11g0770 238 Gene3D - 80 157 IPR036638 GO:0046983
Lele11g0770 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Lele11g0770 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 147 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0770 Lele-ChrLele11 7765593 7767976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0770 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.199 2.47e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele11g0770 HLH 8.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0770 11 7765593 7767976 Lele11g0770 11 7765593 7767976 ECH
Lele09g0768 09 6034446 6036829 Lele11g0770 11 7765593 7767976 hybridization
Lele10g0697 10 5268032 5270469 Lele11g0770 11 7765593 7767976 hybridization