LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0767	ATGGCAATTCAACGAATTTTGAGTGTTGTAACGTTCAGCTTTTGCGTTCTTTTGTTTCTTCTTCTTACTTCAGCGGGTAACTTGAAAGAAAGGGAAGAATCACGAACAGACTTCCTTAGTCAGCTACTCGATCCGTCATCTGGATTGTTGTTCGATGACAACGTGGCAGCACAGTTATGGTACTCATGCTGGGTGGATTTGATTCAGTTAAAGGAAGAGGTAGAAGATCTTGTCGTATGGTTACCGCAAGAATCATCAAGTAGCACTGATGAAAATTCAGAAATTCGATATATGTTGAGAGAAAACATCCAAAAATTGATTAATGCACACCATCCACAGTTAAAGCAAGCTTTTCTTCATTGCTTGAGACAGAATGATCTACCATTCCGTGTCTCTGGAGAAGAGGCTAATTCTAAGACATGGCATGCCTCCTTTATAGAATCAATGTTTTCCAGATCCAGCGTTCTTAGAAGAAATTTGGCTCAGGAACTTCCTCAACACATATTAGTGGCACCTACCCCAGGTCCTGCAGTTATGTCACCAGCTCCGAGTCCAGTGCCATCACCTGAGCTGGCCCCATCACCTTCCATCTCTCAAGTTCCTAAATCCGGTCATCCTTCTTCATCGCTTCAAACTCCATTCTTCCGACAGCTGGAGCCTCCAGCTATTGGGGATACCACTGCACAGCCATCTTCAGATGCTGATATACAGGCAGATAAGAAAAGTAATCATAAAAGAACAGTTGTTCTTGCCATAGTAATAACTGCTTTCGTGACATTTGTAATTGCAGCACTACTATTTTTATGCTGCAGTAGATATAGGAGTGGTCGACATAAACAAAATGATGAGAGGCCCCTTCTCAACTTGAGCATGAGCGACTACTCTATTGCCTCTTCCCATTATACTTTTGGAAATTCAGTGAAAGAGGAGAAACTTGGGTTTCAGTCATCAACTAATTACACTGGTGACCACAAAAAGATATCATCTGTGAATGCCAATGCCCATGTTAGCTCCAGTAGTTTCCATACCACAGTGCAGGAAGCTCAATCAATAGCAGCTTTTGGAGTTGCTGCGGGATCATCAATTGAACAGAGACACCCTCCTGGGAGGGAGGGAACCACCACATCTGGATTGCCTACTCTAAAACCTCCTCCTGGGAGGGCAGGAACCACCACTTCTGGATTGCCTCCCCTAAAACCTCCTCCTGGCAGACTGAACCCTCTTCCCCCTGAACCACCTTTTAGACCTGATAATGCTGCTCCTCCTCCTCCACCTCCTGCACCTTCACAACCTGTGAAATCTCACTCTGATGCTGGTGGGGCTCCAAATCCAGGACCTCCCCTACCTCCTGCACCCCCACAGCCTGTGAAACATCATTCTAGTGTCGGGGGAGCTCCACCTCCTGGACCCCCACCACCACCAGTTCCACCTGGTGCCCGACCAGGTGTTCATCCACCACCACCTCCTCCTCCAAAGGGTGGTATAGCTCCTCCACGACCTCCTCCACCTATTGGTCCAAAGATAGCACAGCGGAAGTCTCCACAGAATGCAGGAGCTGGTTCAGAAGGTGAAGCCCATGCTCCTAAAGCCAAGCTAAAACCTTTTTTCTGGGATAAGGTCCAAGCCAACTCAGATCATTCAATGGTCTGGAATCAGATTAAATCAGGATCATTCCAGTTTAATGAAGAGATGATAGAGACTCTTTTTGGCTATAGTAATGTGGATAAACACAAAGGTGAACCAAAGAAAGAGTCATCATCTCAAGACCCTTCAACTCAGTATATCCAGATAATTGACAGGAAAAGAGCACAAAATTTGTTGATTTTGCTGCGAGCCTTGAACATCTCAACAGAAGAAATTTGTGATGCACTTCATGAGGGAAATGAGCTTCCCTCAGAATTTGTGCAAACCTTGCTGAAGATGGCACCAACATCTGACGAAGAACTTAAGCTTAGACTTTTCAGTGGTGAAATATCCCAACTTGGGCCTGCAGAGCGATTCATAAAAGCTTTGGTTGACATTCCATTTGCTTTTAAACGAATGGAAGCATTGCTTTTCATGAGTACTTTTCAAGAGGATCTCGCTGCCACTAAGGAGTCCTTAGCAACTTTAGAGGTTGCATGTACGGAGCTAAGAAGCAGTCGGCTGTTTCTCAAGCTTCTAGAAGCTGTTCTTAAAACTGGAAACCGTATGAATGATGGTACATATCGTGGTGGGGCACAAGCATTTAAACTTGATACACTACTGAAATTGTCTGATGTGAAAGGAACGGATGGCAAGACCACACTCTTACACTTCGTAGTCCAAGAGATAGTCCGCTCTGAGGGCAAAAGAGCTGCTCGACTGGAAAAAGAAAAGCAGAGTTCCTCTGGTATTAAAAAAGATGGCCGTCTTGAAGATGCATCTGATGAAACTGAGGAACGCTATCACGATCTTGGTCTTCAGGTGGTTTCACATTTGAGCAGCGAACTGGACAATGTTAAGAAAGCAGCAGCTATTGATGCTGACAGCTTAACGGGAACTGCAGCCAAACTTGGCCAGGGTGTCCTTAAAATCAGAAATTTTGTGAACAGTGACTTGAAGAGCATAGAGGAAGATAGACAATTTTGTCAGGCAGTGAAGGCTTTTGAGCAGGATGCTGAGAATGATGTCACTAGTCTTCTGGAAGAAGAGAAGAAAATCATGGCTCTGGTGAAGAGCACCGGTGATTATTTTCACGGGAAAGCGGGGAAAGATGAAGGATTGCGGTTGTTTGTGATCGTACGGGACTTCTTGATGATGTTAGATAAGGTGTGTAAGGAAGTGAAAGACGCCCCAAAGATACCAAAAGCTCAAAAGCAAGACACACCTAAAGCATCATCTTCTGATGTTCGTTCACCACCTGATTTTCGCCAGCTGCTATTTCCAGCAATTGCAGATAGGCGTGTGAAAGACGATAGTTCAGACGATGAGAACGAACCTTGA	2964	0.4487	MAIQRILSVVTFSFCVLLFLLLTSAGNLKEREESRTDFLSQLLDPSSGLLFDDNVAAQLWYSCWVDLIQLKEEVEDLVVWLPQESSSSTDENSEIRYMLRENIQKLINAHHPQLKQAFLHCLRQNDLPFRVSGEEANSKTWHASFIESMFSRSSVLRRNLAQELPQHILVAPTPGPAVMSPAPSPVPSPELAPSPSISQVPKSGHPSSSLQTPFFRQLEPPAIGDTTAQPSSDADIQADKKSNHKRTVVLAIVITAFVTFVIAALLFLCCSRYRSGRHKQNDERPLLNLSMSDYSIASSHYTFGNSVKEEKLGFQSSTNYTGDHKKISSVNANAHVSSSSFHTTVQEAQSIAAFGVAAGSSIEQRHPPGREGTTTSGLPTLKPPPGRAGTTTSGLPPLKPPPGRLNPLPPEPPFRPDNAAPPPPPPAPSQPVKSHSDAGGAPNPGPPLPPAPPQPVKHHSSVGGAPPPGPPPPPVPPGARPGVHPPPPPPPKGGIAPPRPPPPIGPKIAQRKSPQNAGAGSEGEAHAPKAKLKPFFWDKVQANSDHSMVWNQIKSGSFQFNEEMIETLFGYSNVDKHKGEPKKESSSQDPSTQYIQIIDRKRAQNLLILLRALNISTEEICDALHEGNELPSEFVQTLLKMAPTSDEELKLRLFSGEISQLGPAERFIKALVDIPFAFKRMEALLFMSTFQEDLAATKESLATLEVACTELRSSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIVRSEGKRAARLEKEKQSSSGIKKDGRLEDASDETEERYHDLGLQVVSHLSSELDNVKKAAAIDADSLTGTAAKLGQGVLKIRNFVNSDLKSIEEDRQFCQAVKAFEQDAENDVTSLLEEEKKIMALVKSTGDYFHGKAGKDEGLRLFVIVRDFLMMLDKVCKEVKDAPKIPKAQKQDTPKASSSDVRSPPDFRQLLFPAIADRRVKDDSSDDENEP	987

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	195	215	-	-
	Lele11g0767	987	Pfam	Formin Homology 2 Domain	524	928	IPR015425	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	360	528	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	464	508	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	176	194	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	442	456	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	939	964	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	175	240	-	-
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	395	431	-	-
	Lele11g0767	987	SMART	it6_source	522	943	IPR015425	-
	Lele11g0767	987	PANTHER	FORMIN-RELATED	440	981	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lele11g0767	987	MobiDBLite	consensus disorder prediction	779	804	-	-
	Lele11g0767	987	Gene3D	Formin, FH2 domain	527	958	IPR042201	-
	Lele11g0767	987	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	522	954	IPR015425	-
	Lele11g0767	987	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	486	941	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0767	Lele-ChrLele11	7737148	7742123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0767	495	976	FH2 protein (formin) Gene Family	AT5G54650	65.164	0.0	602

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele11g0767	11	7737148	7742123	Lele11g0767	11	7737148	7742123	ECH
	Lele09g0764	09	6007745	6012760	Lele11g0767	11	7737148	7742123	hybridization
	Lele10g0694	10	5239200	5244167	Lele11g0767	11	7737148	7742123	hybridization