Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0729 ATGACGAAGCCAGCTTCTTCTTCTAATGATCAGAAGAATGGATTGAAGAAAGGTCCTTGGACTCCCGAAGAAGATCAGAAGCTTATCGATTATATTCATAGACATGGATACGGCAAATGGCGTACTCTTCCCAAAATTGCTGGACTTAAGAGATGTGGAAAGAGTTGCCGGCTTCGCTGGACGAACTACTTAAGGCCGGATATAAAGAGAGGCAGATTCTCCTTCGAGGAAGAAGAAACCATCATCCAGTTACACAGTGTTCTGGGAAACAAGTGGTCCACGATTGCTGCTAGCTTGCCGGGAAGAACAGATAATGAGATAAAAAATTATTGGAATACCCATATCAAGAAGAGGCTGTTGAAGATGGGGATTAATCCAGTGACTCACACCCCATGCTTGGATATTCAACACTTCTCCTCTATTCTCAACTCTTCTCTCTACAGCAACCATCCTGATCCTCACTTTGGAATCCCAAATAATAATAACATATTAAATCCAAGCCTCTTAAGCTTGCTCACGGCTTTCTTATCATCATCATCACTATCATCTCAGAACCCATCAGATGCTCCAAATCAGAATTACCAGTTGAATAACTCTATTCAAACCTTCCCTCTTCAAGAAAACCAGTCCTGTGCTGCTTCACAGCCTTTACCTCTGGAATCTCAACAACTCATCAAAGCAAAACAAGATCAAATGATATTCTCTCCATCAGATACCCCTAATTTTAGCTACCAGAGTAGCCTATCAAATTTGGGGCAGTACGACGGAGGTCTTCATAATAATTACTCTACCGGTCTTTTGGAGAATCATCAGATTGCACAAAACAACAGAGGAGATCAGAATTTCACTTTTGGATCATTGATATCGTCGTACTCGCCCACACCTTCATCTTCTACTAGTCCGAGCACTTTGAATTCGTCATCAGCGTCTTCCGCAGCAACCTTCGTCAAAGGTGCCACTGAAGAGGAAAGGGACACTTACTGCAGCAACATGTTGCTGTATAACATCTCAAACGGCTTAAATATTGATACCTCTTGTCTTTTGTGA 1047 0.4202 MTKPASSSNDQKNGLKKGPWTPEEDQKLIDYIHRHGYGKWRTLPKIAGLKRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSTIAASLPGRTDNEIKNYWNTHIKKRLLKMGINPVTHTPCLDIQHFSSILNSSLYSNHPDPHFGIPNNNNILNPSLLSLLTAFLSSSSLSSQNPSDAPNQNYQLNNSIQTFPLQENQSCAASQPLPLESQQLIKAKQDQMIFSPSDTPNFSYQSSLSNLGQYDGGLHNNYSTGLLENHQIAQNNRGDQNFTFGSLISSYSPTPSSSTSPSTLNSSSASSAATFVKGATEEERDTYCSNMLLYNISNGLNIDTSCLL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0729 348 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Lele11g0729 348 SMART sant 69 117 IPR001005 -
Lele11g0729 348 SMART sant 16 66 IPR001005 -
Lele11g0729 348 CDD SANT 19 64 IPR001005 -
Lele11g0729 348 FunFam Transcription factor MYB39 72 133 - -
Lele11g0729 348 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele11g0729 348 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele11g0729 348 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Lele11g0729 348 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele11g0729 348 CDD SANT 72 115 IPR001005 -
Lele11g0729 348 Gene3D - 72 119 - -
Lele11g0729 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele11g0729 348 FunFam MYB-related transcription factor 16 69 - -
Lele11g0729 348 MobiDBLite consensus disorder prediction 1 15 - -
Lele11g0729 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 275 - -
Lele11g0729 348 Gene3D - 14 70 - -
Lele11g0729 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lele11g0729 348 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0729 Lele-ChrLele11 6895438 6896840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0729 11 343 MYB Transcription Factor Family AT4G21440 48.034 1.09e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele11g0729 Myb_DNA-binding 3.3e-16 CL0123