Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0691 ATGCTAATGGCGGTGATCAATGAGAAGACTGAGCGAAATTCTGATTTCAATGCTAAAGATTGGCTAGTGCCTCGGAAGTGCCAGAGTGAACGAACGGCTGATCCAAGTGCACACTGCACGGCGCCACTTACCTTTCCGATGAGGTCCAAATCGAGGCGTCGCCGGCGAAGCTTTGTCTGGCCATCGATTTCTCCGGCCAATTCTGAACCTACCCACTTCCTGAAGATTATACTTCCGGGAACTATTCATGCCCAAAACATGAGAATTCCAAAGGAGTTCGTAAGAAGATTTGAGAATGAACTGTTTACTAGTGAGGCAACGATTGGTGTTCCAGATGGTCTTGTTTGGAAGATGGACCTGAAGAAGAAATCCAAAAACGAAGCTTGGTTTTGCAAGGGTTGGGAGGAATTTGTGCAGTACTATTCTATTAGTTTAGGCTTCTTTTTAGTGTTTAAATATGAAGGCAATTCAAAATTCAGTGTGGTGATCTTTGATTCGAGTGCATCTGAGATTCACTATCCATGCAAAGCTGATAACCCTGAGAATCAGCAGAACTCAGTATCTGATCAATCTGGGTACAACACAAGAAGGAACCAAAGGCATAAGCTGGAAGATGAAGAAGAAATAATCGACATAGAAGATGAGAATAATGCATTAAGCCTTGGTAAATCAGGAAAGAAAGACAGATCTGGGAAAGAAATTGATAATTCAATAAAGCATGAGAAAGAAAGATCTGGGCAAGTGCAAAGAAGCCGTAGTCCCAAAATGAAGAAGAGAACTTCGAGTAGAAAGCGAAGAGCTTTGGAAGCTGCCCAGAATTTCCAACCAGCGAATCCACACTTTACTGCAATAATAAGGCCAGCTAATCTGAATCGTTGTTACGTGGATGTGCCGGCTGAATTTCTGAGGGCGAATATGGGAGAAATGGGTGCCATGAAGCTGGAGGATTGTAGTGGAGGAAAATGGGAAGTGAATTATGGGAAACACGTGTCATCTATCCGAATAGGGAAGGGTTGGATCGGTTTTGCAAGGGCCAACAATGTGAAGGAAGGAGACGTGTGTGTGTTTGAGCTTATAAAGAGGAAGGGCCATGTATTTAAAGTTACCATATTTGCCTGTTGA 1122 0.4314 MLMAVINEKTERNSDFNAKDWLVPRKCQSERTADPSAHCTAPLTFPMRSKSRRRRRSFVWPSISPANSEPTHFLKIILPGTIHAQNMRIPKEFVRRFENELFTSEATIGVPDGLVWKMDLKKKSKNEAWFCKGWEEFVQYYSISLGFFLVFKYEGNSKFSVVIFDSSASEIHYPCKADNPENQQNSVSDQSGYNTRRNQRHKLEDEEEIIDIEDENNALSLGKSGKKDRSGKEIDNSIKHEKERSGQVQRSRSPKMKKRTSSRKRRALEAAQNFQPANPHFTAIIRPANLNRCYVDVPAEFLRANMGEMGAMKLEDCSGGKWEVNYGKHVSSIRIGKGWIGFARANNVKEGDVCVFELIKRKGHVFKVTIFAC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0691 373 MobiDBLite consensus disorder prediction 175 205 - -
Lele11g0691 373 MobiDBLite consensus disorder prediction 220 265 - -
Lele11g0691 373 CDD B3_DNA 279 371 IPR003340 GO:0003677
Lele11g0691 373 SUPERFAMILY DNA-binding pseudobarrel domain 67 167 IPR015300 -
Lele11g0691 373 CDD B3_DNA 72 165 IPR003340 GO:0003677
Lele11g0691 373 PANTHER B3 DOMAIN-CONTAINING 68 366 - -
Lele11g0691 373 SUPERFAMILY DNA-binding pseudobarrel domain 274 371 IPR015300 -
Lele11g0691 373 SMART B3_2 73 167 IPR003340 GO:0003677
Lele11g0691 373 SMART B3_2 281 369 IPR003340 GO:0003677
Lele11g0691 373 MobiDBLite consensus disorder prediction 178 194 - -
Lele11g0691 373 Gene3D - 64 168 IPR015300 -
Lele11g0691 373 ProSiteProfiles B3 DNA-binding domain profile. 72 167 IPR003340 GO:0003677
Lele11g0691 373 ProSiteProfiles B3 DNA-binding domain profile. 280 373 IPR003340 GO:0003677
Lele11g0691 373 Gene3D - 259 373 IPR015300 -
Lele11g0691 373 Pfam B3 DNA binding domain 282 371 IPR003340 GO:0003677
Lele11g0691 373 Pfam B3 DNA binding domain 82 166 IPR003340 GO:0003677
Lele11g0691 373 MobiDBLite consensus disorder prediction 220 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0691 Lele-ChrLele11 6554270 6557399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0691 73 371 B3 DNA Binding Superfamily AT3G18990 30.499 8.00e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele11g0691 B3 7e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0678 09 5138805 5142295 Lele11g0691 11 6554270 6557399 hybridization
Lele10g0618 10 4566759 4568451 Lele11g0691 11 6554270 6557399 hybridization