Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0689 ATGGCTGATCACCTCGCAGATTCTCTCCCAACCGTCGGACCATCAGGACACGACATTATTATTGGCGATTCTCTTCAAACCGATGAATACACAGTCATGTTCGATCTTCGAACCTTCATCATCATCGGCTTCTCGTTCTCACTCTTCTTTTGCGTCGTCTACCAGATCATCTGCAGCTTCTTCTACCAGCTCATCGACACCAGGATTTACCATCACCGCGACGTCAACCTCGAAGAAGGAACAGACCTAATGGCTGCCGGTGGCGAGCACCAGGAGGCGCTGTTTCAGGCCCTAGTTCTGAGCAACATGCAGGCTTGGGTGATGGTGGGAGCATTAATGGAGGATTCGGAGAGCAGAGGGGAAACTCTGAGGGCCATGAAGAAATTGCCGGCATTGGTGAAGTATGGAAGAGAGGATAATAATGAGAATGAAGGGGCGAGAAATTCTGTGGAATGTGTGATATGCTTGGAAGATTTTAAAGTTGGAGAAGTGTGTCAGATATTTCCAAGGTGCAACCATGTGTTTCATTCGAATTGCATTGATTGTTGGTTGGCGACCAAGCTTACGTGCCCAACATGTCGGAGTTACATTACGTAA 597 0.4791 MADHLADSLPTVGPSGHDIIIGDSLQTDEYTVMFDLRTFIIIGFSFSLFFCVVYQIICSFFYQLIDTRIYHHRDVNLEEGTDLMAAGGEHQEALFQALVLSNMQAWVMVGALMEDSESRGETLRAMKKLPALVKYGREDNNENEGARNSVECVICLEDFKVGEVCQIFPRCNHVFHSNCIDCWLATKLTCPTCRSYIT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0689 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 46 196 - -
Lele11g0689 198 SMART ring_2 152 193 IPR001841 -
Lele11g0689 198 CDD RING-H2_PA-TM-RING 151 194 - -
Lele11g0689 198 SUPERFAMILY RING/U-box 151 197 - -
Lele11g0689 198 Pfam Ring finger domain 151 194 IPR001841 -
Lele11g0689 198 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lele11g0689 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0689 Lele-ChrLele11 6549758 6550354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0689 31 195 C3H Transcription Factor Family AT1G53010 29.240 3.40e-17 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0677 09 5135816 5136415 Lele11g0689 11 6549758 6550354 hybridization