Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0672 ATGGAGGCCAAGAGTATAGAGAGGAAACAACCATTCACTGAGAAGTCAAAGGACAAAATAATTGAAGAAGCAGAAGATGAAGAAGAGGAAGAAGAGGAAAAGAAGAAAGGGGTTGTTGGTGGGAGTAACAGAAGAGGATCAAGTGGTGGTTATAAAATTTCTTCAGCTTCCTGTCAAGCAGATAGGTGTGGAGCTAACTTGGCTGACGCAAAGCGATACCATCGCCGCCATAAAGTGTGTGAGTTTCATTTCAAGGCGCCCGTTGTGATCGTTGCGGGGCTCAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACATAGGGGAATTTGATGAGGCGAAGAGGAGCTGCCGGAGGAGCTTGGCGGAGCACAATGAGAGGCGGCGGAAAAGTAATACAGAAACTCACAATGATGGCGGCGAATGTCATAATCAGAACCCAATGGAAGGGCGTTTCAGGCATGTTGATGACAGGGGAAGAGTGAATCAAATGAACGTTCATAATTCTGGGAATTGGAGCAGCAAGTCTTTTAATATCAGATAA 546 0.4615 MEAKSIERKQPFTEKSKDKIIEEAEDEEEEEEEKKKGVVGGSNRRGSSGGYKISSASCQADRCGANLADAKRYHRRHKVCEFHFKAPVVIVAGLRQRFCQQCSRFHDIGEFDEAKRSCRRSLAEHNERRRKSNTETHNDGGECHNQNPMEGRFRHVDDRGRVNQMNVHNSGNWSSKSFNIR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0672 181 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Lele11g0672 181 MobiDBLite consensus disorder prediction 1 51 - -
Lele11g0672 181 MobiDBLite consensus disorder prediction 121 152 - -
Lele11g0672 181 SUPERFAMILY SBT domain 57 136 IPR036893 GO:0003677|GO:0005634
Lele11g0672 181 Pfam SBP domain 58 131 IPR004333 GO:0003677
Lele11g0672 181 MobiDBLite consensus disorder prediction 121 138 - -
Lele11g0672 181 MobiDBLite consensus disorder prediction 1 22 - -
Lele11g0672 181 Gene3D - 50 119 IPR036893 GO:0003677|GO:0005634
Lele11g0672 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 134 IPR044817 GO:0003677
Lele11g0672 181 Coils Coil 14 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0672 Lele-ChrLele11 6407016 6407650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0672 52 170 SBP-box Gene Family AT3G15270 51.667 6.86e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele11g0672 SBP 7e-31 No_clan