LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0667	ATGGCTCCCCGAGTCCCACCCATCTCCCTCGCCGCCCCCAACGGCCCCACTCTCGCCGCCAAAGAGATTCACTTTCGCGGCGTCCGCAAGCGTCCCTGGGGACGTTACGCCGCCGAGATCCGTGACCCCGGCAAGAAAACTCGCGTCTGGCTTGGCACTTTTGACACAGCTGAGGAGGCGGCGCGTGCCTACGACACCGCTGCACGCGAGTTCCGTGGACCTAAGGCCAAGACCAATTTCCCCACTCCTTCTGAGCTTGTAAATAACGCCACCAACAACAACTCTACCCGCAGTCCTAGCCAGAGCAGCACCCTCGATTCTTCGTCTCCTCCTCCTCCGCCGCCGCCGTTAGACCTTAGCCTCACGCCGTTTTCTGCCGGCGTTGGTTCTATGGGGTTTCCGGTCTTCCCCGTGGCTCGTCCCGTTGTTTTCTTCGACGCGTTTGCGAGGGCCAACAACATGAGAAGCGTTGGCCATCGCGAGATGTGCGGGTTTCACCGCCCGGTCACCGATTTACGTCCCGCCGCTGGGAGTGTGCAGAGTGACTCCGACTCATCGTCTGTCGTCGACTACGAGCGTGCTCCACAGCCTCGGAGACTTCTGGATCTCGACCTGAACCTTGCTCCTCCGGCGGAGATCATTTTGGAAGAACAGGACCACCCTCTACGGAGACAGAGACAGGGGGAGAGAGGAGGGTTCGAGTACGAAGACGTAGCTGACATGCTTGGATTTGTTAATGAGGATAACTGGAGCGGATGGAGAAAGCTGACGTGGAGAAGGAGCAGGGGATTCATGGTTTACTACAGGATTCAGGCTATATTAATTCGATCCTACGGCGAATACAGGGTTCAGGACGGTGTCGTTTCGAGGTTAGGAACATTTATGCGAAGTGTGGGTGGGTGTTGTGGGGGGAGGGAACCAATGAGGGGGAGGCATGTAAGGTGGGGTGGGGCCCACAAGGGCATTAGCCGTGTTGACCATGGAGCTGTCGGGGTTGATGTTATCGTCACGTAA	1014	0.5799	MAPRVPPISLAAPNGPTLAAKEIHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPTPSELVNNATNNNSTRSPSQSSTLDSSSPPPPPPPLDLSLTPFSAGVGSMGFPVFPVARPVVFFDAFARANNMRSVGHREMCGFHRPVTDLRPAAGSVQSDSDSSSVVDYERAPQPRRLLDLDLNLAPPAEIILEEQDHPLRRQRQGERGGFEYEDVADMLGFVNEDNWSGWRKLTWRRSRGFMVYYRIQAILIRSYGEYRVQDGVVSRLGTFMRSVGGCCGGREPMRGRHVRWGGAHKGISRVDHGAVGVDVIVT	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0667	337	Gene3D	AP2/ERF domain	24	82	IPR036955	GO:0003700\|GO:0006355
	Lele11g0667	337	CDD	AP2	24	81	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	FunFam	Ethylene-responsive transcription factor 2	24	82	-	-
	Lele11g0667	337	Pfam	AP2 domain	24	73	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	SMART	rav1_2	24	87	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	ProSiteProfiles	AP2/ERF domain profile.	24	81	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	MobiDBLite	consensus disorder prediction	106	120	-	-
	Lele11g0667	337	PRINTS	Ethylene responsive element binding protein signature	47	63	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	PRINTS	Ethylene responsive element binding protein signature	25	36	IPR001471	GO:0003700\|GO:0006355
	Lele11g0667	337	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	24	196	-	-
	Lele11g0667	337	MobiDBLite	consensus disorder prediction	72	121	-	-
	Lele11g0667	337	SUPERFAMILY	DNA-binding domain	24	82	IPR016177	GO:0003677
	Lele11g0667	337	MobiDBLite	consensus disorder prediction	81	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0667	Lele-ChrLele11	6361751	6364150	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0667	20	172	AP2-EREBP Transcription Factor Family	AT3G15210	56.442	9.98e-47	156

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele11g0667		AP2	7.7e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele11g0667	11	6361751	6364150	Lele13g0793	13	19764961	19765656	ECH
	Lele11g0667	11	6361751	6364150	Lele14g0683	14	18133787	18134482	ECH
	Lele11g0667	11	6361751	6364150	Lele15g1686	15	10033472	10034167	ECH
	Lele11g0667	11	6361751	6364150	Lele16g1724	16	10021738	10022433	ECH
	Lele11g0667	11	6361751	6364150	Lele11g0667	11	6361751	6364150	ECH
	Lele09g0652	09	4959240	4959878	Lele11g0667	11	6361751	6364150	hybridization
	Lele10g0597	10	4392051	4392683	Lele11g0667	11	6361751	6364150	hybridization