Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0659 ATGGAGAATTTCTTCTTGTCATTCCAAAACCAGAAACACCCAGAGAAACACAACAAAAAGAGGCTGACTGAAGATCAAGTGGCCGTCCTAGAGAAAAGTTTTGCCTGCAGAAAGAAGCTGGAGACAGAGCAGAAGTCGCAGCTCTCAAAACAACTAGGTGTGCCACCGAGACAGATCGCGATATGGTACCAGAACAAGAGAGCTCGCTGGAAGACACAGAGTCTTGAGGAAGACTATGGTGCCTTGCAGCTGAAGCTAGAGAGTGTGATGGCAGAGAAGAAGCAACTTGAGAGCGATGTTGATCTTCATGAAAGCTGA 318 0.4686 MENFFLSFQNQKHPEKHNKKRLTEDQVAVLEKSFACRKKLETEQKSQLSKQLGVPPRQIAIWYQNKRARWKTQSLEEDYGALQLKLESVMAEKKQLESDVDLHES 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0659 105 PRINTS Lambda-repressor HTH signature 44 53 IPR000047 GO:0003677
Lele11g0659 105 PRINTS Lambda-repressor HTH signature 53 69 IPR000047 GO:0003677
Lele11g0659 105 ProSitePatterns 'Homeobox' domain signature. 48 71 IPR017970 GO:0000981|GO:0006355
Lele11g0659 105 SUPERFAMILY Homeodomain-like 15 81 IPR009057 -
Lele11g0659 105 SMART HOX_1 15 77 IPR001356 GO:0003677
Lele11g0659 105 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Lele11g0659 105 CDD homeodomain 16 74 IPR001356 GO:0003677
Lele11g0659 105 Pfam Homeodomain 18 71 IPR001356 GO:0003677
Lele11g0659 105 Gene3D - 12 80 - -
Lele11g0659 105 Coils Coil 79 105 - -
Lele11g0659 105 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 13 100 IPR045224 GO:0003700
Lele11g0659 105 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0659 Lele-ChrLele11 6325734 6326051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0659 8 100 Homeobox Transcription Factor Family AT5G53980 53.763 1.51e-26 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele11g0659 Homeodomain 6.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0659 11 6325734 6326051 Lele11g0659 11 6325734 6326051 ECH
Lele09g0644 09 4925735 4926199 Lele11g0659 11 6325734 6326051 hybridization
Lele10g0592 10 4354015 4357343 Lele11g0659 11 6325734 6326051 hybridization