Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0649 ATGACTGAGGGCATCAGAGGAAATTGCCAACATTTTAATGCCGCAGCTAGTTCTTCGGTAGCTCCTCCAAATGCAGGCCACTCTGATGGGGTTTCTGCATCATTTTCTTTGCCTCAATTTAGAGGAAATCACGTTCCATCACTTGTAGAAATTGGGCCTCATGGTAATTTGTGGAGCAGACCTGGTGATTCAGTTATGATGCATGAACACAACCATTTGATGCAAGGAAACTATTTGGGCCAGCATTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAACTGTACGAACAGTGAAAGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATATGCAAGTTGAAGATGCTGCTGTTAATGGAAGTTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCACGATACAGGTAGCCTCAGGTTTACTCATCCTCCTCCTGTTAACCACCAGCGCCATAATTATCACCTTCCAACTATGCCTATGCAAGGAGTAAGAGGCCACAATGTCAACTTTCACCCTCCAGTTACTGCAACTTCGTATAGAGGGGTTCCGTCAAATTCTCCACATGGTAGCATTATCCCAGTGCAGAATGGTTTTGGGTTGGTTACTAGGCATGTTGGCCCTGCACCGTCAGCAAGCCAACGGATACATCGTTCTCATAGAGAAGTCATGCCCAATACGTCTCTTAGACATCACAATTCCCGTCCAATGAGTTTTCTCCACGTTGATGATGTTGCTTTACTTGACGAAGTGGAAAATTTAGTCGACCGTCATCATGGTGATATGCGTTTGGACATAGAAGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCGAATTGGCAGTGTGAACACAGGTTTGTCCGAGGAAACTATCACAACTCAATTGAAAACAAAAACTTTCGAGCCCTCCTCCACCACTGCTAATCCGGTGGAGGCAGCTTCCGAGGATGAGGAAACTGATTCTTGCATCATATGCCTGGACGAATATAAGAACCAAGAGACGGTTGGAATTCTCGAATGCGGGCACGATTATCACGCCGATTGCTTGAAGAAATGGTTGCTACTGAAGAACGTCTGCCCTATATGCAAATCAGAAGCATTGCCCCCTAGAAGGAAGGACGTATAA 1146 0.452 MTEGIRGNCQHFNAAASSSVAPPNAGHSDGVSASFSLPQFRGNHVPSLVEIGPHGNLWSRPGDSVMMHEHNHLMQGNYLGQHFQPAPPPWLDQQLNCTNSERHNMAWNQSHSMPYMQVEDAAVNGSSLENANTGMQRYHDTGSLRFTHPPPVNHQRHNYHLPTMPMQGVRGHNVNFHPPVTATSYRGVPSNSPHGSIIPVQNGFGLVTRHVGPAPSASQRIHRSHREVMPNTSLRHHNSRPMSFLHVDDVALLDEVENLVDRHHGDMRLDIEDMSYEELLALGERIGSVNTGLSEETITTQLKTKTFEPSSTTANPVEAASEDEETDSCIICLDEYKNQETVGILECGHDYHADCLKKWLLLKNVCPICKSEALPPRRKDV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0649 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 14 374 IPR045191 GO:0061630
Lele11g0649 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 375 IPR013083 -
Lele11g0649 381 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Lele11g0649 381 SMART ring_2 329 369 IPR001841 -
Lele11g0649 381 Pfam Ring finger domain 327 370 IPR001841 -
Lele11g0649 381 SUPERFAMILY RING/U-box 323 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0649 Lele-ChrLele11 6261907 6264076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0649 245 374 C3H Transcription Factor Family AT2G15530 45.522 6.97e-34 131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0649 11 6261907 6264076 Lele11g0649 11 6261907 6264076 ECH
Lele09g0636 09 4857208 4866045 Lele11g0649 11 6261907 6264076 hybridization
Lele10g0584 10 4304661 4306559 Lele11g0649 11 6261907 6264076 hybridization