Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0630 ATGCAGGATTTATATGATGACGACTTTGAAGGTTCTAATGATGAAAGACGGATTTTTAATGAGGTATTTTTCAGTAAAGACAGTGTTCAGCCTAGTCGGAGGTGTCTTGTTACTGGAGTGATCAATTTTGAATGTGAATCTAGTAAAAACACAAATATTTCACTCTGCTTTAGCAATGAAAACTCAGTTATAACAAGCCCCTCTTCTTCAAAAGTTACACATTCTGAGGATGATTGTGATGTGATTCAGAATTTGAAAGAGACAGCTCTTGACTATATGCCTGAGAGATTCAATCATGAAGGCTCAAATCATGAGGATGTAAATGTTAAACGCATGAAATTTTCCCTGCATGAACTTCCCTGTAGTAGATCCAATTCCAAAAAGGCTTCTAGTTCACCGACACTTTCAAAAGAATATGTTACTGACATGTCGGGTGCTGTTAGAGGCTTTGATAGTAAACCAGTTTCACTTCTTTTATTTGAATCATCAAAGCATGGTGTAATATCCAGTTGCTATCTGTTGAAGCATAGCATCATGCAGAACAAAAGTAGATCTAAGGATGATGTAGATGTTTTAAATTGTACAAAAACCGCTGGAGATGAAAATTTGGCCAAAGAAGTGGCTACAAGTAAAGTGGCTGCTTCTCCTGTTTCCCAAGAGAGCTTCGCAAACAAGCTTGTAGTAACAAGTCCATCAAGCACTGCTGTTAAGAAATCTGGATCTCATTTCCAATTTGAGGAGACGCCTAAAGGATTTTTATCCCATGACACGGATAAATCAAATTTAACATTGACACCAGACCTTAAGAAGGACCCCCGTGATTTATTGCATTACCGCAGTGTGCAGTTGCTTGTGATGGCAGGATGGTCTATTGAGAAGCGTAAGAGACCTTGTAGGCGCAACTTTGAGTCAGTCTATAGGACACCAGAAGGAAGGCCAGTGCGTGAGTTTATAAAAGCTTGGAGGTTATGTGGTCAGTTTTTGTCTGCTGACAAATACAATTCAATGCAGGATAATTGTAAAGAATGGGCTGACATTGGTCAGTTCTGGTCTGATCTATCCAATGCACTGATAAATGTTGAAAAGGAAATGAACCAGTCAGAGCCTGCTGCTATGTTAGCTTATCAATGGTGTCTCCTGGATCCTTTTGTAGCAGTAATTTTTATTAAAAGAAAGATTGGTGCACTGAAAAAGGGGGAGCTAGTGAAGGTGACACAAAGTATAGTTTCTAGAAATTATAGGATGGCATGTACCGTCAAAAGTTCAGCTTGGGACTGGGAGGGTGCTCCTGCAGCTCCATTTGATATGAAACATGACTCTGCTTTTCTTTTTGATTCTTCTACTGCCACTGGGAGCAAACTCACAACGTCTCTGCTCAACTACCATGCCTGTAATCAGAAAGTTGGGGGTGGAAATAACTTAGGTTATGAACAGACAATTAGTGGGGTAATAAAACTTCCAATATATGAATGTAATAGTTTTGATAACCAGGAAGAGGTGTACTTAGGGCACAATGCTGAGAGCTTGGAAAATCAATGTAGGGAAGTTTCTGTGTATGAAGGGAGCAGTCTTGGCGTAGGCTTATTACCTGATGATGGGTTGGGTTGTACTGGTACACGGTCAAGTGCTTGTACTTCCAATGTTACTACAAATTCTGGAAATTCAAGTCAGTTATTTAGAGGGCTCAAAGTAAACACTTGTCAGGAAAGTGATGTTAGAAATTTTGAAAGCCCTGATGAAAAGTACTTGGAAAATTTGTTGGAAACAAGTAAGAGAGTTGATGGGGATAAGCCAATGGACAAGGCAGAGGAAAAGGATCCATCAGATGGAGAAGTTCAGGATCATTATGGAAGTTATCTGCAGGAATCCCTTAAAAGATACCCACGTGGAGCAAGACGTGGCTTGGTTCATTGTCATGCCTCAGAGGCCTTTCAGCAGTCTGAATATGGTGAGGAAGGGGGTGGAAAAAGCTCAAGAGATTCTGTGCTTGAGACGGACAACACATGTTCTACCCCTGGTGTTTCTCTGAAAAAGATACGGAGGAAGTGTAAAAGGGTATCTGAAATCAAACTGAGTATGTTATATGAAAGTGACATGATGGGTTCTGCAGTTACAGATGAGGTTCAATTACCAAATGGTGAAGCCTGTGGTACTCACTTAGAATTTGAGGAGGGTGAGCATGTATTTGATAATGCAGAGGATAGAGGAGCCCACAGGAAATTATCATCAATCAGTTCGTTCCAGCAACAACATATTGGGAGAAAAAATGCAAAGTTTAGAAAGAGTTGTCACAACTATGACCCTATAACTGAAAAACCTAAGTCTAGTGGATGCCAGATTTCAGATGATGACCTGTTGGTTTCAGCTATTCTTAAGAAAACAGGTTTCATCTCAAAGACAACTCAAGGTGAATCTAAATCTAAATGCTGCAAATCAAGAGCTCAGAGAAAGCTGAAAAGGCAAAAGGGCCATTGCAGGTTGCTACCGAGGAACCTTGGCAATGAAGGGAAGCGCATTAGGGAAGGCAAGAGGTGTTATCTTGGGGCAAGAACAGTGCTATCTTGGTTGATTGAGAATGGGATCATATCTATAAATGATGTGATCCAATACCGAAACCTTAAAGATAATACTGCCATTAAGGATGGTAGGATTACCAGGGATGGTATTATATGTAAGTGTTGCAAAAAGTTGCTGACATTATCTGAGTTCAAGTTTCATGCTGGATATAGATTAAATCGGCCCTGCTTGAACCTTTTCATGGAGTCTGGTGAGCCCTTTACTTTGTGCCTGCTTCAAGCTTGGTCTGCTGAATACAAGGCCAGTAAAAGTGGGAATCAAACTGTGAAAGCTGACGATGAGGATAAAAATGATGACTCATGTGGATTGTGTGGTGATGGCGGTGAGTTGATATGCTGTGATAACTGTCCATCAGCTTTTCATCTTGCTTGTTTGTCTGCTCAGGATATCCCGGAAGGCAACTGGTACTGCACAAACTGCACTTGTCCGATTTGTGAGAATTTTGTCAATGATAAAGAGGCTGCTGGTGCTCGTGATTCATTGCAATGTTTACAGTGTGAGCATAAATATCATGAAAAGTGTCTGAGGGGAGGCAGTAAACCAGAAGGGGAAGTTTCTGATGGTTGGTTTTGTAGTGAACGCTGCCAAGAGGTATACTCCGGCCTTCAATCTTGGGTTGGACTCGTTAATCATATTGATGGTGGCCTCTCATGGATGCTTCTTAGATGCATCCAAGATGACCAAAAGGTTCATTCTGCCCAGTGGTTTGCCCTCAAGGCTCTATGCAATACAAAATTAACTGTTGCCCTTACCATCATGGGGGAGTGCTTTTTGTCAATGGTGGATCCTAGAACAGGCATAGACATGATACCCCATGTTTTATACAATCGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAGAAAGATGTCTTGATTTCTGTAGCATCTATCAGGGTGCACGGAACTACAGTTGCAGAGATGCCGCTTATTGCAACTTGCAGTAGGTATCGTCGGCAGGGAATGGGCCGACTTCTTGTGAATGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGCAAAGCTTGTGATAGCAGCCATTCCAGATTTAGTGGAGACCTGGACCAAGGGCTTTGGATTCAAACCTGTAGGTGATGATGAAAAGCAGAAACTGAACAAAATAAACCTGATGGTTTTTCCTGGGACGGTATTACTTGAAAAACCCTTGTTCAAGGAGGATGAAACAGAAGATTACTCGACTAAAGTTGGGGTCTATTGTAAAGGAGCCAAGTCAGACGCGGAACATGATGACAGCAAGAATGGCACAGATTACAGAATCGAATCATTGCAGAAAGATGTTGGAGACACCTCTGCTGATGAAATTGGTATTAAGTCAGACACGGAACATGGTTGCAGCGAGAATGACACAGATTACAGAGCTGAGCCATCATTAGGATTGAAAGAAACAGCAGATTGGAATACCTATTTAAGTGGGGAGAAGATCATGGGCTTTGTAAACAATGTGCAGGAATTGAGAATTAGTAGCCAAATGGAATCCACAAATGAGTCTGTGCAGAAGAACTCTAGTGGGAACTGTTGCACTAACAAAGACGGTACTGAATCAGAAGTAGTAAGAATTATTGAGAACAAGAATATCATCGAAGTGGGTGAAGGTCAGGAGAATGACTTGCGGGGCCCGTTTTTGCAAATGTCCTGCAAGGCACTGGCAGTATTAGGCAACAATTTTGATGTGGATGACATTATTGAATCCTCGGGGATGTATGATGAAACACAGCTTTCTTTGGAACAGAACTCGCAGGAGGCATGTGAAATGATGAATGAAACTCAGAAAGGAATTAGTTAA 4404 0.413 MQDLYDDDFEGSNDERRIFNEVFFSKDSVQPSRRCLVTGVINFECESSKNTNISLCFSNENSVITSPSSSKVTHSEDDCDVIQNLKETALDYMPERFNHEGSNHEDVNVKRMKFSLHELPCSRSNSKKASSSPTLSKEYVTDMSGAVRGFDSKPVSLLLFESSKHGVISSCYLLKHSIMQNKSRSKDDVDVLNCTKTAGDENLAKEVATSKVAASPVSQESFANKLVVTSPSSTAVKKSGSHFQFEETPKGFLSHDTDKSNLTLTPDLKKDPRDLLHYRSVQLLVMAGWSIEKRKRPCRRNFESVYRTPEGRPVREFIKAWRLCGQFLSADKYNSMQDNCKEWADIGQFWSDLSNALINVEKEMNQSEPAAMLAYQWCLLDPFVAVIFIKRKIGALKKGELVKVTQSIVSRNYRMACTVKSSAWDWEGAPAAPFDMKHDSAFLFDSSTATGSKLTTSLLNYHACNQKVGGGNNLGYEQTISGVIKLPIYECNSFDNQEEVYLGHNAESLENQCREVSVYEGSSLGVGLLPDDGLGCTGTRSSACTSNVTTNSGNSSQLFRGLKVNTCQESDVRNFESPDEKYLENLLETSKRVDGDKPMDKAEEKDPSDGEVQDHYGSYLQESLKRYPRGARRGLVHCHASEAFQQSEYGEEGGGKSSRDSVLETDNTCSTPGVSLKKIRRKCKRVSEIKLSMLYESDMMGSAVTDEVQLPNGEACGTHLEFEEGEHVFDNAEDRGAHRKLSSISSFQQQHIGRKNAKFRKSCHNYDPITEKPKSSGCQISDDDLLVSAILKKTGFISKTTQGESKSKCCKSRAQRKLKRQKGHCRLLPRNLGNEGKRIREGKRCYLGARTVLSWLIENGIISINDVIQYRNLKDNTAIKDGRITRDGIICKCCKKLLTLSEFKFHAGYRLNRPCLNLFMESGEPFTLCLLQAWSAEYKASKSGNQTVKADDEDKNDDSCGLCGDGGELICCDNCPSAFHLACLSAQDIPEGNWYCTNCTCPICENFVNDKEAAGARDSLQCLQCEHKYHEKCLRGGSKPEGEVSDGWFCSERCQEVYSGLQSWVGLVNHIDGGLSWMLLRCIQDDQKVHSAQWFALKALCNTKLTVALTIMGECFLSMVDPRTGIDMIPHVLYNRGSDFARLNFQGFYTVVLEKKDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMGRLLVNAIEEMLISVKVAKLVIAAIPDLVETWTKGFGFKPVGDDEKQKLNKINLMVFPGTVLLEKPLFKEDETEDYSTKVGVYCKGAKSDAEHDDSKNGTDYRIESLQKDVGDTSADEIGIKSDTEHGCSENDTDYRAEPSLGLKETADWNTYLSGEKIMGFVNNVQELRISSQMESTNESVQKNSSGNCCTNKDGTESEVVRIIENKNIIEVGEGQENDLRGPFLQMSCKALAVLGNNFDVDDIIESSGMYDETQLSLEQNSQEACEMMNETQKGIS 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0630 1467 CDD NAT_SF 1151 1211 - -
Lele11g0630 1467 Gene3D - 1134 1244 - -
Lele11g0630 1467 MobiDBLite consensus disorder prediction 646 666 - -
Lele11g0630 1467 CDD PHD_SF 1000 1052 - -
Lele11g0630 1467 SUPERFAMILY FYVE/PHD zinc finger 950 1000 IPR011011 -
Lele11g0630 1467 Pfam Tify domain binding domain 882 932 IPR032308 -
Lele11g0630 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 944 1019 IPR013083 -
Lele11g0630 1467 PANTHER PHD FINGER FAMILY PROTEIN 3 1380 - -
Lele11g0630 1467 SMART PHD_3 959 1000 IPR001965 -
Lele11g0630 1467 SMART PHD_3 1001 1055 IPR001965 -
Lele11g0630 1467 ProSiteProfiles Zinc finger PHD-type profile. 957 1002 IPR019787 -
Lele11g0630 1467 CDD PHD1_AIRE 960 999 - -
Lele11g0630 1467 Pfam PHD-finger 960 1001 IPR019787 -
Lele11g0630 1467 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1141 1233 IPR016181 -
Lele11g0630 1467 MobiDBLite consensus disorder prediction 588 614 - -
Lele11g0630 1467 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1118 1257 IPR000182 GO:0016747
Lele11g0630 1467 MobiDBLite consensus disorder prediction 588 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0630 Lele-ChrLele11 6122214 6129564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0630 1 407 PHD Transcription Factor Family AT3G14980 34.230 1.98e-47 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele11g0630 TDBD 2.5e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0618 09 4722019 4730010 Lele11g0630 11 6122214 6129564 hybridization
Lele10g0571 10 4181863 4188473 Lele11g0630 11 6122214 6129564 hybridization