Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0628 ATGTCGCATTCTGGGAAGTCCGATTCGGAGCTAGGGTTAGGCGCTCTCAAAGATCGATTTCGGGAGTCCCTGAGTTGCGAGGCGAACAAGCCGGATTTTCGGGAGCTCGATCTAGGGTCGCCGGTTTCGCCATTGCGGACCCGTCAGAGTGGACCTACTGCTAGTGGACTCACCACTACTACCAGCAGTAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCAATGGGTACAACCCGGTCTCGAAAAGATCCGATTCTGGTGCGAACAATCACTCCGGTGAGCTTTCTGGTTCCAGCGAGAGCAGTCCTACTGCAGCCGAGAGCCTTCGGTCTGGTGGGAATGCCAGGAACTTAAAGCCGGGTCACACAAGATCCGATGCTGGAACCACCTCACCTTTAATCTATTCGGGTCAAAGCTCAACCGTCACATCACCGGCGTTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGCAAGATTCTGAAGACGGGCATGGCATCTAATCGGACCTCCAGGTCGGACGTTTTGGGCTCCGGTACGGCCAATTATGGTCACGGAAGCATAATGCGGGGCGGTGGAACATCCAAACATACTGCCGGAGAGGCGGCAAGTACGGCAAATGCAAGGCCAACCGGTGGTGGCGGTTTCAAAGAACCGTTCAAGAAAGCGGCGGCAGGTTTGGATCCAGAAGAGATCAAAAGAGCGGGGAACGAGCAGTACAAGAGGGGTAACTTTACAGAGGCATTGAATCTTTACGATCGGGCAATTGGACTGTCCCCAGGTAATGCCGCTTACCGGAGCAATCGTGCGGCTGCATTGACGGCATTGGGTCGGTTGACTGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGATTGGATTCTAATTATGGAAGAGCGCACCAGCGTCTTGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCGAGGAAGCACCTATTTGGTCATGGGCCGCAGCCGGATCCTTCTGAGTTGCAGAAGTTACAATCGGTGGAGAAGCATATCAACAAATGTACTGATTTTCGAAGGATAGGTGATTGGAAAAGTGTCCTCAGGGAAGTTGATGCTACTGTTGCTGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGTGGAAGCCCTTTTAAAGCTCCACCAAATTGATGACGGCGAATTGATTCTGTCAGCTATTCTAAAAACAGAATCACATTCTAAATCCTCGTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCTTTGTTAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCCGAGAAAGCTGGCCTGATTGATCCCCGGAACATTGAAGTTGCTGTTTTGCTCAGCCATGTAAGGATGGTGGCTAGAGCTCGAGCTCGTGGTAATGATCTTTTCAAGTCTGAAAGGTTCACCGAAGCTTGCTCTGCATATGAGGAAGGTTTAAGACTGGACCCTTCAAATGCTGTTCTATATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCATTGGGAAAGATCAATTGAGGACTGCAATCAAGCTTTACACATCCAGCCAAATTACACAAAAGCCCTTCTTCGAAGGGCTTCCTCAAATAGCAAGCTAGAAAGGTGGGAAGAAGCTGTCAAAGATTATGAGGTCTTACGAAGAGAACTTCCAGATAACAATGAAGTTGCTGAAGCTCATTTCCATGCATATGTTGCATTGAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTTGGCGGTGAAGTGGAAGGAGTATCCGGTCTTGAGCAATTTAGAGCCGCAATTTCTTTACCAGGTGTATCTGTCGTCCATTTTGAAAGTGAATCTGATTCGCAATGCAAACAATTATCACCATTTGTTAATACACTGTGCAGTCGATATCCTTCTGTTAGCTTTCTCAAGGTGGATATTCAGAAAAGCCCAGCAATTGGAGCCGCTGAGAATGTTAGGTTGGTACCAACTTTCAAGATCTACAAAAATGGCATCCGCGTGAAGGAAATTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCGCTTAG 2109 0.4817 MSHSGKSDSELGLGALKDRFRESLSCEANKPDFRELDLGSPVSPLRTRQSGPTASGLTTTTSSSSSSSGSVSGRNGYNPVSKRSDSGANNHSGELSGSSESSPTAAESLRSGGNARNLKPGHTRSDAGTTSPLIYSGQSSTVTSPALNVLPTGNICPSGKILKTGMASNRTSRSDVLGSGTANYGHGSIMRGGGTSKHTAGEAASTANARPTGGGGFKEPFKKAAAGLDPEEIKRAGNEQYKRGNFTEALNLYDRAIGLSPGNAAYRSNRAAALTALGRLTEAVRECEEAVRLDSNYGRAHQRLASLFLRLGQVENARKHLFGHGPQPDPSELQKLQSVEKHINKCTDFRRIGDWKSVLREVDATVAAGADSSPQLFMCRVEALLKLHQIDDGELILSAILKTESHSKSSSQARFFGMLSEAYSFFVRAQIEMALGRFENAVTAAEKAGLIDPRNIEVAVLLSHVRMVARARARGNDLFKSERFTEACSAYEEGLRLDPSNAVLYCNRAACWFKLGHWERSIEDCNQALHIQPNYTKALLRRASSNSKLERWEEAVKDYEVLRRELPDNNEVAEAHFHAYVALKKSRGEEVYNLKFGGEVEGVSGLEQFRAAISLPGVSVVHFESESDSQCKQLSPFVNTLCSRYPSVSFLKVDIQKSPAIGAAENVRLVPTFKIYKNGIRVKEIVCPSRDMLEHSVRHYSA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0628 702 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Lele11g0628 702 SUPERFAMILY TPR-like 231 571 IPR011990 GO:0005515
Lele11g0628 702 Gene3D Glutaredoxin 597 701 - -
Lele11g0628 702 SUPERFAMILY Thioredoxin-like 505 700 IPR036249 -
Lele11g0628 702 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
Lele11g0628 702 Pfam Thioredoxin 608 692 IPR013766 -
Lele11g0628 702 MobiDBLite consensus disorder prediction 26 154 - -
Lele11g0628 702 MobiDBLite consensus disorder prediction 123 151 - -
Lele11g0628 702 FunFam TPR repeat-containing thioredoxin TTL4 594 701 - -
Lele11g0628 702 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Lele11g0628 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 699 IPR044534 -
Lele11g0628 702 MobiDBLite consensus disorder prediction 43 111 - -
Lele11g0628 702 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Lele11g0628 702 Pfam Tetratricopeptide repeat 236 296 - -
Lele11g0628 702 SMART tpr_5 502 535 IPR019734 GO:0005515
Lele11g0628 702 SMART tpr_5 230 263 IPR019734 GO:0005515
Lele11g0628 702 SMART tpr_5 422 455 IPR019734 GO:0005515
Lele11g0628 702 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele11g0628 702 SMART tpr_5 468 501 IPR019734 GO:0005515
Lele11g0628 702 SMART tpr_5 536 569 IPR019734 GO:0005515
Lele11g0628 702 CDD TRX_family 607 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0628 Lele-ChrLele11 6095125 6098243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0628 467 612 U-box Gene Family AT3G07370 28.962 2.37e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0628 11 6095125 6098243 Lele11g0628 11 6095125 6098243 ECH
Lele09g0616 09 4696846 4699964 Lele11g0628 11 6095125 6098243 hybridization
Lele10g0567 10 4149073 4152153 Lele11g0628 11 6095125 6098243 hybridization