Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0621 ATGGGCGGTGGGAAGTGTGAACTGGGGAAGGGCTTTAAGATTGCTGCCCTGGTGCAGCTTCCAGGACCACGCGATTCACCCCACCAATGTCTTATAAAGCGAAACAAGAGAACTTCCACATTTATCTTATGTCTTGCCCTTACACCATCTTTCACAGATAAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCAAATACTGAATATATCATATCACTTGATTCTGAGGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGTACCAACTTCACAATCTATGACAGCCAGCCACCCCATAATGGTGCAAAGCCGTCAAGCAGCAGGGCGAGCCGTAGATTTACGAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAAGTGGGACAGGTCTCATACAAGTTCAACATTTTGAAATCAAGGGGGCCAAGAAGGATGGCTTGCACAATGAAGTGCCCCTTTCCTTTTCCAGGAGAAAGTTCAGATAAAAAAAATCTGGACACTGCCAATAAGGCGGACAACAAAGAACACGTCGTTGCAGCTGGCTACTCGATATTGAAAAACAAAGCTCCAAGATGGCACGAGCATTTGCAGTGTTGGTGCTTGAATTTCCATGGCCGTGTGACGGTGGCATCGGTGAAGAATTTTCAGCTGGTCGCCACAGTGGATCAGAGCCAACCGGACAGAAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGGGGATGATACTTTCACCATGGATTATCGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCCATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTAA 867 0.4694 MGGGKCELGKGFKIAALVQLPGPRDSPHQCLIKRNKRTSTFILCLALTPSFTDKGKFLLAARRYRRGANTEYIISLDSEDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPFPFPGESSDKKNLDTANKADNKEHVVAAGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPDRKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0621 288 MobiDBLite consensus disorder prediction 106 128 - -
Lele11g0621 288 Gene3D Tubby Protein; Chain A 12 288 IPR025659 -
Lele11g0621 288 Pfam Tub family 19 283 IPR000007 -
Lele11g0621 288 ProSitePatterns Tub family signature 2. 273 288 IPR018066 -
Lele11g0621 288 PRINTS Tubby superfamily signature 72 88 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 198 215 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 245 264 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 216 232 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 266 288 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 88 112 IPR000007 -
Lele11g0621 288 PRINTS Tubby superfamily signature 137 164 IPR000007 -
Lele11g0621 288 ProSitePatterns Tub family signature 1. 216 229 IPR018066 -
Lele11g0621 288 SUPERFAMILY Tubby C-terminal domain-like 14 288 IPR025659 -
Lele11g0621 288 PANTHER TUBBY-RELATED 17 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0621 Lele-ChrLele11 6040176 6044722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0621 18 288 TUB Transcription Factor Family AT1G53320 79.710 1.69e-158 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele11g0621 Tub 1.4e-101 CL0395