Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0594 ATGAAGATTCAGTGCAGTGTGTGTGAAGCTTCCGAGGCTAAGGTTTTATGTTGTGCCGACGACGCGGCGCTGTGTTGGGAATGTGACGAGAAAGTTCATGCCGCCAATAAGCTTGCCGGCAAGCACCAGAGAGTTCCTCTTTCTTCCTCTGGTTCTCATATGCCCAAATGTGATATTTGTCAGGAATCTTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTACTCTGCAGAAAATGTGATGTGGCAATACACAAAGCAAATTCCTATGTTTCCACTCATCAGAGGTTTCTGTTGGCTGGTATAAGAGTAGGACTTGAAGCTACCGAGCCCGGTGCTTCCTCGTCTTCTGCTAAATCACAGTCTGAGGAGAAGAGGTCAGATACAAAATCCTCTTCTGCCTCTAGAAGGGTTTCTTCAGTACCTGAGTTATCTGAACAAAATGAAGTTATACCTTCCCAAGGTGGTGGTGGAGGAGCTGGGCAGTTTCCACCTTCTAAGAATTACAATTGCATGGACAATGAACCATCCAAGTTTTTGCTGGCTGACACGGGGAAGCCTGGGGATTGTGATTCTCCTGGTTTAGATACCGGCGAAGAGGAAATATATGATGATGAGGATGACAACGATGACTGCTTCAGGCGATTTTCGGATTCATCTTGGATGGTTCCTCAGATCCCTTCCCCTCCTACAGCTGCAGGGTTAAATTGGCCTAAAGACACTCAATATACACATGATAATGCTATGCTTGTTCAGGTTCCAGACATATGTATTTCTGACTCACAACACTTCTTGTTCATGGCTGTGTCAAGTAAGATTGGTTTTGGAGCATTCTTGGGTTCAATAGAATCCATTGCAGATGCATAA 867 0.4498 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHQRVPLSSSGSHMPKCDICQESFGYFFCLEDRALLCRKCDVAIHKANSYVSTHQRFLLAGIRVGLEATEPGASSSSAKSQSEEKRSDTKSSSASRRVSSVPELSEQNEVIPSQGGGGGAGQFPPSKNYNCMDNEPSKFLLADTGKPGDCDSPGLDTGEEEIYDDEDDNDDCFRRFSDSSWMVPQIPSPPTAAGLNWPKDTQYTHDNAMLVQVPDICISDSQHFLFMAVSSKIGFGAFLGSIESIADA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0594 288 MobiDBLite consensus disorder prediction 133 152 - -
Lele11g0594 288 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele11g0594 288 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele11g0594 288 FunFam B-box zinc finger protein 22 1 93 - -
Lele11g0594 288 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lele11g0594 288 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lele11g0594 288 CDD Bbox1_BBX-like 5 47 - -
Lele11g0594 288 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele11g0594 288 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 257 - -
Lele11g0594 288 CDD Bbox1_BBX-like 56 99 - -
Lele11g0594 288 MobiDBLite consensus disorder prediction 180 209 - -
Lele11g0594 288 Gene3D Classic Zinc Finger 1 93 - -
Lele11g0594 288 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele11g0594 288 SUPERFAMILY B-box zinc-binding domain 46 94 - -
Lele11g0594 288 MobiDBLite consensus disorder prediction 194 208 - -
Lele11g0594 288 MobiDBLite consensus disorder prediction 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0594 Lele-ChrLele11 5841625 5843987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0594 1 256 C2C2-CO-like Transcription Factor Family AT1G78600 45.048 4.15e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele11g0594 zf-B_box 3.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0594 11 5841625 5843987 Lele11g0594 11 5841625 5843987 ECH
Lele09g0584 09 4442674 4445119 Lele11g0594 11 5841625 5843987 hybridization
Lele10g0534 10 3900225 3902288 Lele11g0594 11 5841625 5843987 hybridization