Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0562 ATGGATATAACAGAAATTACAATATTGCATCACGCGTGCATTGTGCTTCTGGGGCTTTGGTTGTTATCTGCCTTCAACTGCTGCCATCCCGTTGCTTATTTTGTAGCACTGATCTATCTCTACCTGGTTCATGAACGTTATGTCACGAGACTGCGGAGGAAGTTACAATTTGAGGAGAGGAAGCAAGCTAATCAAAGAAGGGTGCTTTCTGATTCTGAATCAGTGCGGTGGTTGAACCATGCAGTTGAAAACATATGGCCTATATGTATGGAACAAATTACCTCTCAGAAGATTTTGCTCCCAATCATACCTTGGTTCTTGGAGAAGTACAAACCTTGGACTGCTAAAAAAGCCGTGGTTCAGCACCTGTACCTGGGGAGAAACCCCCCTTTATTTACTGAAATGAGGGTGCTTCGTCAAAATGGTGATGACCACTTGGTTCTGGAATTAGGAATGAATTTTCTTACGGCTGATGACATGAGTGCAATAATTGCTGTAAAACTAAGGAAAACATTAGGCTTTGGGATGAGGGCAAAGCTGCACATAACTGGGATGCATGTTGAAGGGAAGGTTTTGGTTGGGGTAAAATTTCGCCAAACATGGCCTTTCCTTAGTCGTTTGCGTGTATGCTTTGTCGAACCTCCATACTTCCAAATGACTGTTAAGCCTATATTTACTCATGGGCTTGATGTGACAGAAGTTCCTGGGATTGCTGGATGGCTAGACAAGCTTTTGTCTATCGCATTTGAACAGACTCTTGTTGAGCCTAATATGCTAGTTGTTGATGTTGAGAAATTTGCTTCACCTCAGCCAGAGCCTTGGTTCTCCATCTATGAGAAGGAGCCTGTTGCCTATGCCCATGTAGAAGTTGTTGAAGGATCTGACATGAAGCCATCGGACCTAAATGGGTTAGCAGATCCATATGTAAAAGGTCATTTAGGTGGCTACAGATTCAGGACAAAGATACAAAGGAAAACACTTGCTCCCAAATGGCTAGAAGAATTTAAAATCCCAATTGTAACATGGGAGTGTGCTAATGTGTTGGCTATTGAAGTTTCTGACAAGGACCACTTTTATGATGATAACCTCGGAAACTGTTCTGTCAACCTTAGTGATTTGAGGGATGGCCAGAGACATGAAATGTGGTTACCTCTTCAGAATATTAAAACGGGTAGGTTGCACCTGGCTATAACTATTATTGAAGACAATGCAAAGGAGGTTGATAAAACATGTAACGAGGAAGCAATGGATGCTGAACAAAAAAGGGATTCCTTTGCGAATGAGACTAATAGTAAAAATTCATTCTCATCTGTTTCATCAGAAAAATCCCAAAAAGTTGCAGATAACTATGAGCCTATAGATGTTGAAGGGCAAAAGGAAACTGGAATTTGGGTTCATCAACCAGGTAGTGAAGTGTCCCAAACATGGGAACCAAGGAAAGGGAGGAGCAGACGCCTTGATACTGAAATTCACAGGGAGCCTAATGATTTATGTGGAAGTTTTAATTCAGCAGCATCTGGATCTTTGAACAATGACTGCAGCAGTCCTGACGATAACCCAGAGCATAAGCACAGAATAAAATCATTTAGGAAGGGACTGCACAAGATTGGGTCAGTGTTTCGAAGGGGCCCAAAGAATGAACCTCCAACACCGACATCAGCTCATAGTGTTGAAGAGGCTGTTCCATCTCCGCATGCAAACATTAAGGCTGAGAATGCCAAGGAGATTGGTGTGCGCTTTGTTGTGGAGGATAACATTTCTGAGCTTGCCTCGGGTAAGTTTCAGATAGAAGGAACATCCCCTGAAAGCAATGGTTCTGAGAGCCCAGGCAAGGGAAATGCCAAAGATAAGGCAAAGAATATGCTGAAGCATGCTGCAGGGAAATCAGCTCGTGGCCTAAAGCACATGCTTTCCTATAAATCAAGAAAATCTGAAGTTGACTCACTTCGAGAAACAACTAGGGTCTCAGAAGAATCTGACTCTTCTGATGATGATGATGATTCCGTTTCAGTTCCATCACCCAGAGATGGAAGAATTCCCGTTGCTTCCAAGGTCATTGTTTCTTTCAACAATGATCCCCCCTTCAATTCCAGTGAGAATGTTGTGGTTCAGACACATCTGCCTGACGTTACTTTGGGCAATGAAGTTCCGACAAAGAAGCTAGGTGTTGAAGAAGAGCCTGCAAAGCATGACAGCCCTGACAATTCTTCAAAAGTTTATGTTGAAACAAAGCATGGCATCCCTGAGAAATCTTCAGAAGATTATGTTGAAACAAAGCATGACAGATTGAGCGGTGGGACGGAACAGATATGA 2313 0.4272 MDITEITILHHACIVLLGLWLLSAFNCCHPVAYFVALIYLYLVHERYVTRLRRKLQFEERKQANQRRVLSDSESVRWLNHAVENIWPICMEQITSQKILLPIIPWFLEKYKPWTAKKAVVQHLYLGRNPPLFTEMRVLRQNGDDHLVLELGMNFLTADDMSAIIAVKLRKTLGFGMRAKLHITGMHVEGKVLVGVKFRQTWPFLSRLRVCFVEPPYFQMTVKPIFTHGLDVTEVPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFASPQPEPWFSIYEKEPVAYAHVEVVEGSDMKPSDLNGLADPYVKGHLGGYRFRTKIQRKTLAPKWLEEFKIPIVTWECANVLAIEVSDKDHFYDDNLGNCSVNLSDLRDGQRHEMWLPLQNIKTGRLHLAITIIEDNAKEVDKTCNEEAMDAEQKRDSFANETNSKNSFSSVSSEKSQKVADNYEPIDVEGQKETGIWVHQPGSEVSQTWEPRKGRSRRLDTEIHREPNDLCGSFNSAASGSLNNDCSSPDDNPEHKHRIKSFRKGLHKIGSVFRRGPKNEPPTPTSAHSVEEAVPSPHANIKAENAKEIGVRFVVEDNISELASGKFQIEGTSPESNGSESPGKGNAKDKAKNMLKHAAGKSARGLKHMLSYKSRKSEVDSLRETTRVSEESDSSDDDDDSVSVPSPRDGRIPVASKVIVSFNNDPPFNSSENVVVQTHLPDVTLGNEVPTKKLGVEEEPAKHDSPDNSSKVYVETKHGIPEKSSEDYVETKHDRLSGGTEQI 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0562 770 MobiDBLite consensus disorder prediction 591 679 - -
Lele11g0562 770 MobiDBLite consensus disorder prediction 712 770 - -
Lele11g0562 770 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 283 400 IPR035892 -
Lele11g0562 770 MobiDBLite consensus disorder prediction 414 447 - -
Lele11g0562 770 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 71 264 IPR031468 GO:0008289
Lele11g0562 770 MobiDBLite consensus disorder prediction 638 657 - -
Lele11g0562 770 MobiDBLite consensus disorder prediction 427 446 - -
Lele11g0562 770 ProSiteProfiles C2 domain profile. 269 383 IPR000008 -
Lele11g0562 770 MobiDBLite consensus disorder prediction 539 574 - -
Lele11g0562 770 MobiDBLite consensus disorder prediction 592 610 - -
Lele11g0562 770 Pfam C2 domain 287 385 IPR000008 -
Lele11g0562 770 SMART C2_3c 285 382 IPR000008 -
Lele11g0562 770 MobiDBLite consensus disorder prediction 719 770 - -
Lele11g0562 770 Gene3D C2 domain 276 401 IPR035892 -
Lele11g0562 770 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 1 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0562 Lele-ChrLele11 5584690 5590233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0562 281 421 Lipid Metabolism Gene Families AT3G61300 27.397 1.15e-08 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0562 11 5584690 5590233 Lele11g0562 11 5584690 5590233 ECH
Lele09g0555 09 4195593 4201133 Lele11g0562 11 5584690 5590233 hybridization
Lele10g0511 10 3701692 3707502 Lele11g0562 11 5584690 5590233 hybridization