Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0554 ATGGCTGCGGTTGCTGAGATTTCCGTTGATTCAGCCGCTGCGACCAAATTGGACTCAAAGCCGCAGCCTGAAACCGAATTTAATGTACAGAAGCTTGTTGATATGTTTACAAAGCTGAATCCTTCAGCTAAAGAGTTTTTCCCATCATCGCATTCTCATAACCATCTTGTTCATCTGAGCTCTAATCAGTTCTTTCCCAACAATTTTCTGGTTAAGCCGTCAGATAATGACAATTACTCAAACAACCGAAGGAGAAGAAACAATTTCAATCAGGGAAGAAGGCTGAATGGAAGAGTGCATAAGGCCCAAAGAGAAGACAGCATTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTTTCCAGTTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAATCCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAACGAGGTGCAAGAGCAGCTCTAAACCTTGGCGGTACTGTTCTTGGCTACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATCCTTCCCGTGAATCCTACATTCCTACCCAGGTCAGATGATGAACGGGAGATGTGTAGCAGGACTGTTTATTGTACAAATATTGACAAAAAGATTTCTCAGGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGTGGAGAGGTTACGCGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACCCGAATTGCTTTTGTGGAATTTGCAATTGCAGAAAGTGCCATTATTGCTCTAAATTGTAGTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCGCTCATCCAATGTCGTGTTGA 888 0.4313 MAAVAEISVDSAAATKLDSKPQPETEFNVQKLVDMFTKLNPSAKEFFPSSHSHNHLVHLSSNQFFPNNFLVKPSDNDNYSNNRRRRNNFNQGRRLNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADERGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHVHSTRIAFVEFAIAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRIAHPMSC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0554 295 CDD RRM1_CID8_like 108 187 IPR034823 -
Lele11g0554 295 Pfam Ataxin-2 C-terminal region 35 51 IPR009818 -
Lele11g0554 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Lele11g0554 295 SMART rrm1_1 208 279 IPR000504 GO:0003723
Lele11g0554 295 SMART rrm1_1 111 181 IPR000504 GO:0003723
Lele11g0554 295 FunFam Polyadenylate-binding protein-interacting protein 11 75 187 - -
Lele11g0554 295 CDD RRM2_CID8_like 203 284 IPR034825 -
Lele11g0554 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 185 IPR000504 GO:0003723
Lele11g0554 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 288 - -
Lele11g0554 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Lele11g0554 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Lele11g0554 295 SUPERFAMILY RNA-binding domain, RBD 86 186 IPR035979 GO:0003676
Lele11g0554 295 Gene3D - 71 186 IPR012677 -
Lele11g0554 295 Gene3D - 195 288 IPR012677 -
Lele11g0554 295 MobiDBLite consensus disorder prediction 75 101 - -
Lele11g0554 295 SUPERFAMILY RNA-binding domain, RBD 197 288 IPR035979 GO:0003676
Lele11g0554 295 FunFam Polyadenylate-binding protein-interacting protein 10 201 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0554 Lele-ChrLele11 5481605 5485429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0554 107 264 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 4.31e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0554 11 5481605 5485429 Lele11g0554 11 5481605 5485429 ECH
Lele09g0547 09 4116722 4120506 Lele11g0554 11 5481605 5485429 hybridization
Lele10g0503 10 3618938 3622747 Lele11g0554 11 5481605 5485429 hybridization