Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0546 ATGGCCTTGCAATTGCACATGACTTGGCTGCCGAGTCTTCTCTCTCAGAAGCGCAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTATACTCCTCCTCTTGCCAATTTCTGTCTTCGAAACAATCACTCTTCCCTTTGCGATTCTTCTTCGGAGGAAAGGAAGCGGGACTGTCCTTTTTGTCTACTCGAGAAACGAATTGTTCGTTCTTTGAGAGTGGATCTCGCCCAAGACGCTCCGTTGAAGATCCAGAACTGTCTCAGGATTTTCGCCGAGCACTTTCGTTGTGGTCGTCAGGAGGATGCTCACGAGTTCTTGAGGTACGTTATCGATGCCTGCCACAACACTTGCCTTCGCCTCAAGAAGTTGAGGCGCAAGGGGGGCGACGCGGCTATCAATGGTAACGGCAACAATACTGTGGTTAAGGAGATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGTCTCTCTTGTGGCTATGAGTCCAATAAGGTGGATGAGATTATGGATATCAGTCTTGATATTTTGCATAGCAATTCGCTTAAAGATGCTATGCAAAAGTTCTTTCAGCCTGATGTTTTAGATGGGAATAACAAGTACAGATGTGACAATTGCAAGAAATTGGTGGCTGCTAAGAAACAAATGTCTATACTTGAAGCCCCTAATGTCCTCGTTATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATAGACAAGGCTGTTGCATTTGAAGACATTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCAATGCCAGAATATAGGCTCTTTGGTACCATTGTCCATTCTGGATACTCCCCAGAATCTGGCCATTATTATGCTTATATAAAGGATGCAAAGGGCCGGTGGTATTGCTGTGATGATTCTTCTGTCTCACTTGCTACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATACTTTTTTTTTCTCGCACTAACCAAAGGCCTGTGCCAATTAGAAATGGTTTTGCTGCAAATGGTTCAAGGTCTCATGACTCTCATCACAATAATGGAATTCAGGCATCTGAATGTCCAAAATCTGATGCGCTACCAAAAGTAGTGCATGCAAAATTGAGTTCTCAACAATCTTCTTGGAAGGACATGTCTACCTTGTCCAAGACTGGTAAAGAGCCTTCTAGCCCACGAGTGAAGTTTAATTTTAATGGAAATTCTACTTCCAAAAGAGGCCATGAAAGTATCAATGGGAAAGTTGATGTTCCGTTAAATCAGCCTGTAGTAACTAATGGATATGTAAAAGACTCAGTTGCTTCGGAGAATGCTAAGAAAGATTCTTCATCAGTCAGGAACGGTTTTAAAAAAAATAAAGTAGACACTGTTGACAACTTAAAAAGGAAGGATTCCGTGTTAACTAATAAAAACACTGGTATTCATTCTATTGAAAAATATCCTAGAAAGTCAGATCTTATGGTTGACTCTGGGAGAAGCAGAGCAATACCAGGTAAAGGGGCTGACAACTATAAGCTAGAAGGCAATGGTGTCAACAACAAACCTAAATCATTGAGGAATAAGAGGAAGGAACCAGTGGGTACCAGCATTTTGCTTGCGCGTGATGATCAGTCTGAAGCAAGAGTTCAGGAACTGAAAGACATGCTTACAAAAGAGGCAAAGTTAGTCTTAAGATCATGTGGCTGGACAGATAAGGTGTATGATTATATGTCTTCTAGAAAGAGGTTACGTTCACAAGAAGCTGGAAATTCATCAAGTGAAGAAATAAAGAAGTTGCTAATAAGTGAGTCTAAGGGACCTTTCATATCACAGATCCCCGAGTCATTGAAAGAGAATCTGATTGGTCGTCTCCGATTATTTAGCAGAGAAAAGACATGA 1923 0.4249 MALQLHMTWLPSLLSQKRKTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNNHSSLCDSSSEERKRDCPFCLLEKRIVRSLRVDLAQDAPLKIQNCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDAAINGNGNNTVVKEIFGGALQSQVKCLSCGYESNKVDEIMDISLDILHSNSLKDAMQKFFQPDVLDGNNKYRCDNCKKLVAAKKQMSILEAPNVLVIQLKRFEGILGGKIDKAVAFEDILVLSSFMCKASQDPMPEYRLFGTIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYILFFSRTNQRPVPIRNGFAANGSRSHDSHHNNGIQASECPKSDALPKVVHAKLSSQQSSWKDMSTLSKTGKEPSSPRVKFNFNGNSTSKRGHESINGKVDVPLNQPVVTNGYVKDSVASENAKKDSSSVRNGFKKNKVDTVDNLKRKDSVLTNKNTGIHSIEKYPRKSDLMVDSGRSRAIPGKGADNYKLEGNGVNNKPKSLRNKRKEPVGTSILLARDDQSEARVQELKDMLTKEAKLVLRSCGWTDKVYDYMSSRKRLRSQEAGNSSSEEIKKLLISESKGPFISQIPESLKENLIGRLRLFSREKT 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0546 640 FunFam Ubiquitin carboxyl-terminal hydrolase 25 18 340 - -
Lele11g0546 640 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 338 IPR028889 -
Lele11g0546 640 SUPERFAMILY Cysteine proteinases 17 337 IPR038765 -
Lele11g0546 640 MobiDBLite consensus disorder prediction 353 369 - -
Lele11g0546 640 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Lele11g0546 640 MobiDBLite consensus disorder prediction 384 423 - -
Lele11g0546 640 Pfam Ubiquitin carboxyl-terminal hydrolase 24 335 IPR001394 GO:0004843|GO:0016579
Lele11g0546 640 MobiDBLite consensus disorder prediction 384 433 - -
Lele11g0546 640 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 280 298 IPR018200 GO:0004843|GO:0006511
Lele11g0546 640 MobiDBLite consensus disorder prediction 510 537 - -
Lele11g0546 640 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 341 - -
Lele11g0546 640 MobiDBLite consensus disorder prediction 353 372 - -
Lele11g0546 640 CDD Peptidase_C19E 23 336 - -
Lele11g0546 640 Gene3D Cysteine proteinases 17 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0546 Lele-ChrLele11 5380361 5384811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0546 23 347 Miscellaneous Gene Families AT2G24640 36.858 3.96e-61 210
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0546 11 5380361 5384811 Lele11g0546 11 5380361 5384811 ECH
Lele09g0539 09 4033746 4038452 Lele11g0546 11 5380361 5384811 hybridization
Lele10g0497 10 3530183 3536187 Lele11g0546 11 5380361 5384811 hybridization