Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0514 ATGGCCACTCTGCTGAATACGGTATCTCCACCTGCAAGTCTATCATCAAAAACAAAAGGGAACTGTGGTTTTAGCTTACATTCCCAGATTCTAAACATCCGTAAGATTTCCCTCAACAGGGGTTTTCCCAGAGTTTTGGCTTCTACCCAGGTGACTATTTCTTCCAATGATGCTGTTTTTACTCTGCCCAATTGGAGAGCAGGTAAGAGTGATCCAAAAAGTAAGGAGCTAAGGCTTAATGATGCATTTCTGTATTTAGAGTATATGGTGGGTAAAGGTCACAAACCAGATATAGCTCAAGCAACCCAGCTTTTATATGATCTTTGCAAGGCTAATAAGCTGAGGAAAGCTGTTAGAGTGATGGAGATGATGATAGGTTCAGGTATTATACCTTATTCAGCATCCTGTACATATTTGGTCAATCATTTGTGCAACAAAGGAAATGTTGGGCATGCAATGCAATTGGTTGAGAAAATGGAGGAACATGGGTTTCTAGTTAATACTATTACCTATAACACTCTAGTTAAAGGGCTTTGCATGCAGGGAAATTTAAACAAGAGCTTGCAGCTTATAGAGAGATTAAAAAAGAAAGGATTGGTACCAAACGCTTTCACATATTCTTTCTTGCTTGAAGCTGCTTATAAGGAAAGGGGAGTTGATGAAGCCATGAAACTTTTAGATGAGATAATTGCCAAAGGTGGGGAGAGTAACTTGATTAGTTACAATGTTATATTAACTGGGTTGTGCAAGGAAGGTAGAACTGAAGAAGCCTTTAAGCTGTTCAGGGAATTGCCTGCAAAGGGGTTTCATCCTAGTGTTGTGAGCTATAACATTTTGCTGAGGAATTTGTGTTATGAAGGGCGATGGGACGAGGCGAATGGGCTATTAGCGGAGATGGGTGAAGAGGATCAGTCTCCCTCTGTGGTTACCTACAACATATTAATTACTTCTCTTGCCCTCCATGGAAGAATAGAACATGCTTTCAAGGTGTTGGATGAAATGATAAAGAGTGGATTTAAGGCAACTGCTACTAGCTATAATCCAATCATTGCTCATCTCTGCAAGGAAGGTAAGGTTGATCTTGTAGTTCAGTGTCTAGACCAAATGTTTTTTCGGTACTGTAGTCCTAACGAAGGAACATACAACGCTGTTGCTATGCTTTGTGAGGGAGGGAAAGTGCAGGAAGCATTCTCCATAATTCAAAGCTTGGGCAATAAACAAAACTCCCCCATGCATGACTTCTACAAAAATGTGATTTGGAGCATGTGCAGGAAAGGGAACACATATCCAGCCTTTCAAATATTATATGAACTGACAAAGTATGGATTTTCGCCAGATTCTCATACTTATTCATCTTTGGTAAGAGGAATGTGTAGGGAAGGAATGTTTGATGGAGCTATTGAGATATTCAGGATTTTGGAAGAAAATGGGCACAAGCCTGATACCGAAAATTATAACGCGCTTTTACTTGGCCTTTGTAAATCTCATAGATTAGACTTGTCACTGGAGATATTTCAGATGATGATTGATAAAGGATGTATGCCTAATGAAACTACTTATACCATTCTCATTGAAGGGCTCGTTTCAGAAGAAGAAACAGATATAGCAGCCAAGCTTTTGAAAGAGTTGCATCAAAAGGAGGTCCTGAGCCGAAGTACTGCAGAGAGACTTGTTATGCAGTATGACCTCCAGGATTTGGCATATTAG 1707 0.3995 MATLLNTVSPPASLSSKTKGNCGFSLHSQILNIRKISLNRGFPRVLASTQVTISSNDAVFTLPNWRAGKSDPKSKELRLNDAFLYLEYMVGKGHKPDIAQATQLLYDLCKANKLRKAVRVMEMMIGSGIIPYSASCTYLVNHLCNKGNVGHAMQLVEKMEEHGFLVNTITYNTLVKGLCMQGNLNKSLQLIERLKKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIIAKGGESNLISYNVILTGLCKEGRTEEAFKLFRELPAKGFHPSVVSYNILLRNLCYEGRWDEANGLLAEMGEEDQSPSVVTYNILITSLALHGRIEHAFKVLDEMIKSGFKATATSYNPIIAHLCKEGKVDLVVQCLDQMFFRYCSPNEGTYNAVAMLCEGGKVQEAFSIIQSLGNKQNSPMHDFYKNVIWSMCRKGNTYPAFQILYELTKYGFSPDSHTYSSLVRGMCREGMFDGAIEIFRILEENGHKPDTENYNALLLGLCKSHRLDLSLEIFQMMIDKGCMPNETTYTILIEGLVSEEETDIAAKLLKELHQKEVLSRSTAERLVMQYDLQDLAY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0514 568 SUPERFAMILY HCP-like 82 276 - -
Lele11g0514 568 Gene3D Tetratricopeptide repeat domain 73 184 IPR011990 GO:0005515
Lele11g0514 568 Pfam PPR repeat family 344 384 IPR002885 -
Lele11g0514 568 Pfam PPR repeat family 167 212 IPR002885 -
Lele11g0514 568 Pfam PPR repeat family 480 528 IPR002885 -
Lele11g0514 568 Pfam PPR repeat family 237 284 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 239 272 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 485 517 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 135 167 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 448 482 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lele11g0514 568 TIGRFAM PPR: pentatricopeptide repeat domain 169 203 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Lele11g0514 568 Gene3D Tetratricopeptide repeat domain 384 565 IPR011990 GO:0005515
Lele11g0514 568 Gene3D Tetratricopeptide repeat domain 185 302 IPR011990 GO:0005515
Lele11g0514 568 Gene3D Tetratricopeptide repeat domain 303 372 IPR011990 GO:0005515
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lele11g0514 568 Pfam PPR repeat 305 334 IPR002885 -
Lele11g0514 568 Pfam PPR repeat 442 471 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Lele11g0514 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 78 360 - -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Lele11g0514 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Lele11g0514 568 Pfam PPR repeat 108 129 IPR002885 -
Lele11g0514 568 Pfam PPR repeat 135 164 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0514 Lele-ChrLele11 5105602 5107308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0514 114 548 Glycosyltransferase AT1G05670 25.968 4.67e-47 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0514 11 5105602 5107308 Lele11g0514 11 5105602 5107308 ECH
Lele09g0508 09 3764437 3766140 Lele11g0514 11 5105602 5107308 hybridization
Lele10g0470 10 3336091 3336755 Lele11g0514 11 5105602 5107308 hybridization