Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0503 ATGGCGAAATCTGCGCGAGGCCGTCGCTCACCGCCGTCGGGTTCCATCTCGGGCTCCTCATCGCGCTCTAGGTCTTCCTCTCCCTCCGATTCCCGCTCCAGCTCGCGCTCCCGCTCTCCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCTTCCCGCAGTGTCAGTTCTGGGAGCCGAAGTCCACCTCCTCCAAGGAGGAAAAGTCCTGCTGAAGCAGCTAGGAGAGGTAGATCTCCTCCTCCCCAATCTAAAAGGATATCTCCACCCCCTAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGATAAACTGAGCAGGAACGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTCGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAGGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAGGCCTTACTATACATGGATGGTGCCCAGATTGATGGTAATATTGTTAAGGCCAGATTTACCTTGCCGCCAAGGCAGAAGGTTTCTCCAACCTCAAAGGCTCCTGCTCTTGCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCCAGTGCAGATGCTGAAAAAGATGGCCCAAAGAGACAAAGAGAATCTTCTCCTAGGAGAAGACCTCCTTCACCACGAAGGAGATCTCCTGTGCTGACTCGAAGAGCTGGATCACCAAGGCGACTGGATTCTCCTGTTCATCGTCGAATGAACTCACCCTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTGTCTCCCCCGCAAGAGGCAGATCGCCAACTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATACGTGGAACTCCAATTCGCAGGCGTTCTCCTCCTCTAAGGCGCCGTTCGCCGCCTAGACGAGTTCGTAGTCCTAGAAGGTCTCCAATCAATCGGAGACGAAGTCGCTCTCCACCACGGAGGTCTGCACGCTCACGCTCAAGATCATTCTCACCACCACCTCGGAGAGGACGGCCACCTATGAGACGTGGCAGATCATCATCGTCCTACTCTGATTCACCAAGTCCTCACAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAACAGCAGCGGCAGCAGCTCACCACTCCCAGCTCGCAGACCGTAG 1224 0.5335 MAKSARGRRSPPSGSISGSSSRSRSSSPSDSRSSSRSRSPSRSRSFSSSSSPSRSVSSGSRSPPPPRRKSPAEAARRGRSPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPTSKAPALAPKRDAPRADNASADAEKDGPKRQRESSPRRRPPSPRRRSPVLTRRAGSPRRLDSPVHRRMNSPYRRGDTPPRRRPVSPARGRSPTPPRRLRSPARVSPRRIRGTPIRRRSPPLRRRSPPRRVRSPRRSPINRRRSRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPHKVSRRSRSRSPRRPLRGRGSSNSSGSSSPLPARRP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0503 407 MobiDBLite consensus disorder prediction 1 99 - -
Lele11g0503 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Lele11g0503 407 CDD RRM_RNPS1 104 176 IPR034201 -
Lele11g0503 407 FunFam Serine/arginine-rich splicing factor SR45 3 187 - -
Lele11g0503 407 SUPERFAMILY RNA-binding domain, RBD 88 184 IPR035979 GO:0003676
Lele11g0503 407 MobiDBLite consensus disorder prediction 202 227 - -
Lele11g0503 407 MobiDBLite consensus disorder prediction 179 407 - -
Lele11g0503 407 MobiDBLite consensus disorder prediction 10 63 - -
Lele11g0503 407 MobiDBLite consensus disorder prediction 245 270 - -
Lele11g0503 407 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lele11g0503 407 Gene3D - 13 190 IPR012677 -
Lele11g0503 407 MobiDBLite consensus disorder prediction 387 407 - -
Lele11g0503 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 172 IPR000504 GO:0003723
Lele11g0503 407 MobiDBLite consensus disorder prediction 288 338 - -
Lele11g0503 407 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 257 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0503 Lele-ChrLele11 5042528 5047011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0503 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 2.23e-07 51.2