Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0476 ATGCTTAGACCTCGAGACAGGACAGTGCATCCAATCCCTTCTCTGATCGAAACGCAGATTCCCATTCTTTTTCAACCTTCAAATACTCCTCCCTCTTCGCGGCAACTGCAACCCACAATTCCTCTCTCTATCTCTCTCCTATTACATTCACTCTCTCCATCAATAACAACAAGCAAGATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTCGAGAGTAGTGACTCCATCGACAATGTCAAGGCCAAGATTCAGGTTCGATTTTCTGTTCATCATCTCTCTCTTCTTGTTTTTATTGATTGGGATTTCATCACAGAGGTTGCTTTATCGGACAAGGAAGGTATCCCCCCTGATCAGCAGAGGTTGATTTTTGCCGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCGGATTATATCATTCAAAAGGAATCAACACTTCATTTGGTCTTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGGATTCCGCCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAGCTCGCAGATGACAAAACAGCTAAAGAGTACAACATTGAAGGCGGTTCTGTGCTTCACCTGGTGCTTGCCCTTAGGGGTGGTAGTCTTTGGGTAGATTAA 726 0.4477 MLRPRDRTVHPIPSLIETQIPILFQPSNTPPSSRQLQPTIPLSISLLLHSLSPSITTSKMQIFVKTLTGKTITLEVESSDSIDNVKAKIQVRFSVHHLSLLVFIDWDFITEVALSDKEGIPPDQQRLIFAGKQLEDGRTLADYIIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSLWVD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0476 241 FunFam NEDD8 protein 161 238 - -
Lele11g0476 241 SUPERFAMILY Ubiquitin-like 163 236 IPR029071 -
Lele11g0476 241 SUPERFAMILY Ubiquitin-like 55 158 IPR029071 -
Lele11g0476 241 ProSiteProfiles Ubiquitin domain profile. 161 236 IPR000626 GO:0005515
Lele11g0476 241 CDD Ubl_NEDD8 163 236 IPR038738 -
Lele11g0476 241 PRINTS Ubiquitin signature 171 191 IPR019956 -
Lele11g0476 241 PRINTS Ubiquitin signature 213 234 IPR019956 -
Lele11g0476 241 PRINTS Ubiquitin signature 192 212 IPR019956 -
Lele11g0476 241 PANTHER UBIQUITIN 60 162 - -
Lele11g0476 241 ProSiteProfiles Ubiquitin domain profile. 60 160 IPR000626 GO:0005515
Lele11g0476 241 Gene3D - 54 161 - -
Lele11g0476 241 Gene3D - 162 238 - -
Lele11g0476 241 SMART ubq_7 161 232 IPR000626 GO:0005515
Lele11g0476 241 SMART ubq_7 60 156 IPR000626 GO:0005515
Lele11g0476 241 Pfam Ubiquitin family 62 96 IPR000626 GO:0005515
Lele11g0476 241 Pfam Ubiquitin family 113 158 IPR000626 GO:0005515
Lele11g0476 241 Pfam Ubiquitin family 163 234 IPR000626 GO:0005515
Lele11g0476 241 FunFam Polyubiquitin-C 60 92 - -
Lele11g0476 241 ProSitePatterns Ubiquitin domain signature. 187 212 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0476 Lele-ChrLele11 4576734 4578980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0476 165 236 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.500 3.26e-26 97.4