Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0450 ATGCTTCGTCTTCTATCAACTGTCTCGCTTTGTTTTCTGCTTTTTTCGATCGGGAAACCTTCTCAAGTATTCACTTCTGCCACCTGTTCGAGAAAATGTCCAACCCAAGTTAAGGAGGCAGCTGAAAACACAATAGATCAATCAGCGGATGTTGTTCAGGTTTTCAGGGAATGGGGTTCGAAGCTTGCTCAGCTAAGTCGCTACGGGCTAAAGGCACCTGACCTGGTGAGGATAATCAATTGTAGGCCTAGGTTTCTAAGCAGTCGGGTCAATCGTTATTTCGACGAGAGGCTTGCATATCTTGATTCCTTGATTGAGTCCAAGGCATTGCTTAAGAGGGCACTTGTGACGAACCCTTCACTGTTAATCTATGATTTTGACAAAACCATTACACCTGTTCTTGCACAATATGAAGAGTTGGGTTTAAGCAAAGAGGACTTTCTTTTGATGACCTGTTCCCGGCCCACACTTATTTCAAGGACTTCTTTTAATGAGGAAAAGCTGGAATATATACGCAGGACTGGGCTATCTCCGGATTCAAAGAGGTATAAATATGTTGTATCAATAATTGGTATCTCTCGTCTGGAAACAATTTGTGAGAAGATAGCAAATTTTGCCAAATTTGGTTTCTCAGATGAAGAGATATTTGAGTTTATTGGGCGGTCTCCTTTTGTCTTGACACTGTCAATTGAAAAGGTTCAGAAGAATATGACGTTCGTATTGAGCACAATTAATTTAGAAGGGAAAATAGTTCTTAATAATCCACTTCTCTTGTTTATGAGCCTAGATACCAAAATGAAACCACGGTTTCTCCTGGTGAGGAAGGTTGAAGACATGGGTTCTAAGCCTAAAAGTCCACAACTTCCAATGGTTAGTGTTATGAGGATGAGAGAAAAGAGGTTGATAGAGGCATTCATTGAATGCCACAGTAAGGAAATGCCCAATGAGTTGTTGGAGTTCTATATGAAGGCAAAAGAAGTGAAGAGATTAGCAGAATCGTCAAGGACGTGTTTGCATTTCGTGCTGGATTCTTTCCTTCCCTTTCTTTATCTTGAGGTGAATTTCGCTCTCTGGTGCGGTGCAACTTTCCAAGAATCTAGTCCAGATATGACATCTTCTCTTCTTACTAGGATGTTGTTGGGTCCTCGCCTCATTCATTCGTCGAGGCCCCAAATACTAACCTCTTTCTTCAATAAGAGCTCATTTCCTTCACAAGTTGCCACAGCCTATACTGCTCAAAAAACAAGGACAACTGGTTGGGCTCATTTTGTCATGGCTTCTTCTTCCATTAGATCACGAACTTCTTACTCGACAGTGTCTGCATCTATGGATGATCCTGTTGTTTCTGTGGATTGGCTCTATGCTAATCTTAAGAAGCCTGATTTGAAGGTGTTGGATGCCTCCTGGTACATGCCGGATGAACAGAGGAACCCAATTCAAGAATATCAGGTTGCTCACATTCCCGGGGCCCTTTTCTTTGATGTAGATGGAATATCAGATCAATCTTCAAACCTACCACACATGTTGCCATCAGAAGAAGCTTTTGCTGCTGCTGCTTCTGCTCTTGGCATAGAGAATAAAGATGGGTTGGTTGTCTATGATGGAAAGGGAATATTTAGTGCAGCTCGTGTATGGTGGATGTTCCGAGTTTTTGGGCATGATAGAGTGTGGGTATTAGATGGTGGCCTGCCTAGATGGCGTGCATCAGGATATGATGTGGAATCAAGTGCTTCTGGTGATGCTATATTGAAGGCTAGTGCTGCAAGTGAGGCCATAGAGAAAGTATACAAGGGACAAGCAGTTGGGCCAATCACATATAAGACTAAATTTCAGCCACATCTTGTTTGGACGATAGAGCAGGTCAAGAAAAATATTGAGGAAAAAAGTCACCAACATATAGATGCTCGATCAAAGCCCAGGTTTGATGGAGCTGTGCCAGAACCCCGTAAGGGTATTAAAGGCGGTCATGTACCTGGCAGCAAGTGCATTGCTTTTACCCAGGTGCTGGATGCTTCACAAACATTGTTACCAGCAGATCAGCTTAAGAAGCGCTTTGATGAAGAAGGAATCTCTTTGGAAAGCCCAATTGTGGCTTCTTGCGGTACTGGAGTAACTGCTTGCGTTCTTGCATTGGGTCTGCATCGTCTTGGAAAATATGATGTTCCAATCTATGATGGATCTTGGACTGAATGGGGAGCACAATCTGATACACCAGTTGAAACTTCTGAATTGCAATAA 2238 0.4263 MLRLLSTVSLCFLLFSIGKPSQVFTSATCSRKCPTQVKEAAENTIDQSADVVQVFREWGSKLAQLSRYGLKAPDLVRIINCRPRFLSSRVNRYFDERLAYLDSLIESKALLKRALVTNPSLLIYDFDKTITPVLAQYEELGLSKEDFLLMTCSRPTLISRTSFNEEKLEYIRRTGLSPDSKRYKYVVSIIGISRLETICEKIANFAKFGFSDEEIFEFIGRSPFVLTLSIEKVQKNMTFVLSTINLEGKIVLNNPLLLFMSLDTKMKPRFLLVRKVEDMGSKPKSPQLPMVSVMRMREKRLIEAFIECHSKEMPNELLEFYMKAKEVKRLAESSRTCLHFVLDSFLPFLYLEVNFALWCGATFQESSPDMTSSLLTRMLLGPRLIHSSRPQILTSFFNKSSFPSQVATAYTAQKTRTTGWAHFVMASSSIRSRTSYSTVSASMDDPVVSVDWLYANLKKPDLKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGISDQSSNLPHMLPSEEAFAAAASALGIENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYKGQAVGPITYKTKFQPHLVWTIEQVKKNIEEKSHQHIDARSKPRFDGAVPEPRKGIKGGHVPGSKCIAFTQVLDASQTLLPADQLKKRFDEEGISLESPIVASCGTGVTACVLALGLHRLGKYDVPIYDGSWTEWGAQSDTPVETSELQ 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0450 745 Pfam mTERF 79 299 IPR003690 GO:0003690|GO:0006355
Lele11g0450 745 SMART mt_12 76 108 IPR003690 GO:0003690|GO:0006355
Lele11g0450 745 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Lele11g0450 745 SMART mt_12 248 280 IPR003690 GO:0003690|GO:0006355
Lele11g0450 745 SMART mt_12 216 247 IPR003690 GO:0003690|GO:0006355
Lele11g0450 745 MobiDBLite consensus disorder prediction 629 649 - -
Lele11g0450 745 CDD TST_Repeat_2 617 733 - -
Lele11g0450 745 SMART rhod_4 448 572 IPR001763 -
Lele11g0450 745 SMART rhod_4 616 737 IPR001763 -
Lele11g0450 745 MobiDBLite consensus disorder prediction 629 652 - -
Lele11g0450 745 FunFam Sulfurtransferase 611 742 - -
Lele11g0450 745 ProSiteProfiles Rhodanese domain profile. 626 740 IPR001763 -
Lele11g0450 745 Gene3D Transcription termination factor 3, mitochondrial 50 315 IPR038538 -
Lele11g0450 745 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 443 576 IPR036873 -
Lele11g0450 745 ProSitePatterns Rhodanese C-terminal signature. 721 731 IPR001307 GO:0004792
Lele11g0450 745 ProSiteProfiles Rhodanese domain profile. 458 575 IPR001763 -
Lele11g0450 745 Gene3D - 611 743 IPR036873 -
Lele11g0450 745 PANTHER THIOSULFATE SULFERTANSFERASE 440 743 IPR045078 GO:0016783
Lele11g0450 745 Gene3D - 439 581 IPR036873 -
Lele11g0450 745 ProSitePatterns Rhodanese signature 1. 482 493 IPR001307 GO:0004792
Lele11g0450 745 CDD TST_Repeat_1 447 570 - -
Lele11g0450 745 FunFam Mitochondrial transcription termination factor family protein 94 315 - -
Lele11g0450 745 Pfam Rhodanese-like domain 618 733 IPR001763 -
Lele11g0450 745 Pfam Rhodanese-like domain 449 568 IPR001763 -
Lele11g0450 745 Coils Coil 618 638 - -
Lele11g0450 745 FunFam Sulfurtransferase 440 582 - -
Lele11g0450 745 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 619 743 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0450 Lele-ChrLele11 4427516 4437529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0450 425 743 Sulfurtransferasese or Rhodanese AT1G79230 76.489 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele11g0450 mTERF 1.2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0450 11 4427516 4437529 Lele11g0450 11 4427516 4437529 ECH
Lele09g0461 09 3394897 3402230 Lele11g0450 11 4427516 4437529 hybridization
Lele10g0425 10 2992303 2998050 Lele11g0450 11 4427516 4437529 hybridization