Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0439 ATGGATCAATCGGAGCAGGCACAACAGCAGCAGCAAAAGCATGCTGTCGGAGTTGCATCTGGCCCTGGCCAGATGGCCTATTCTACTCACTACCAGACTGCTCCCATGGTAGCTTCTGGAACACCTGCCGTAGCTGTACCTTCCTCAGCACAGCCTCCTGCCTCCTTCTCGAATCCCCCTCACCAAATTGCTTACCAGCAAGCACATCATTTCCACCATCAACAACAGCAGCAACAGCAACAGCTTCAGATTTTTTGGGCTAACCAAATGCAAGAAATCGAGCAAACAACTGACTTCAAGAATCACAGTCTTCCACTTGCTAGGATAAAAAAAATAATGAAAGCTGATGAGGATGTCCGGATGATTTCAGCAGAGGCCCCCGTGATATTTGCAAAAGCATGTGAAATGTTTATCCTGGAGTTGACTCTGCGGTCATGGATTCACACGGAAGAAAACAAGAGGAGAACACTACAGAAGAATGATATAGCGGCTGCTATTTCGAGGACTGATGTATTTGATTTCTTGGTTGACATTATCCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAGTAACAAAAGCTACAATTCCAGTTGTGGGCTCCCCGGCTGATATGCCGTATTATTATGTCCCACCACAGCATCCTGTAGGACCTACGGGGATGATCATGGGAAAACCGGTTGACCAGACAGCGCTATATGCTACCCAACAGCCTCGACCTCCTCATATGGCTTTCATGCCGTGGCCGCAAACACAACCTCCACAACAGCCGCCACCTGATCAGCAACAACCAGACACTTGA 801 0.4806 MDQSEQAQQQQQKHAVGVASGPGQMAYSTHYQTAPMVASGTPAVAVPSSAQPPASFSNPPHQIAYQQAHHFHHQQQQQQQQLQIFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPVVGSPADMPYYYVPPQHPVGPTGMIMGKPVDQTALYATQQPRPPHMAFMPWPQTQPPQQPPPDQQQPDT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0439 266 MobiDBLite consensus disorder prediction 1 17 - -
Lele11g0439 266 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677
Lele11g0439 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 53 225 - -
Lele11g0439 266 MobiDBLite consensus disorder prediction 1 22 - -
Lele11g0439 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Lele11g0439 266 MobiDBLite consensus disorder prediction 242 266 - -
Lele11g0439 266 SUPERFAMILY Histone-fold 64 175 IPR009072 GO:0046982
Lele11g0439 266 MobiDBLite consensus disorder prediction 239 266 - -
Lele11g0439 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0439 Lele-ChrLele11 4350230 4351030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0439 82 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 92.308 1.10e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele11g0439 Histone 6.8e-18 CL0012