Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0396 ATGGCAGCCAGTACTACTACAACCGCCGCGCCGCCGCGTCAGCTATCCCAGAAGGAGGCTGACATTCAGATGATGTTAGCCGCGGAGGTTCACCTCGGGACCAAAAATTGTAACTTTCAAATGGAGCGTTACGTCTTCAAACGCCGTAACGACGGTATTTACATAATCAACCTTGGAAAGACTTGGGAAAAGCTTCAGCTTGCTGCTAGGGTTATTGTTGCCATAGAGAACCCTCAGGATATTATAGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAATACACAGGTGCTCATGCACTTGCTGGAAGGCACACTCCTGGTACATTCACTAACCAGCTCCAGACATCCTACAGTGAGCCTCGCCTTCTCATTCTGACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCACTTGGAAATATACCAACTATCGCGTTCTGTGACACTGATTCTCCCATGAGATATGTTGACATCGGTATTCCTGCCAACAACAAGGGAAAGCACAGCATAGGTTGTCTCTTTTGGCTTTTGGCAAGGATGGTTCTGCAGATGAGGGGCACTATTCGTCCAGGGCTTAAGTGGGACGTTATGGTGGATCTATTCTTCTACAGAGAACCTGAGGAGACCAAGCAACAAGAGGAAGATGAAGCGCCTACTGCTCCAGAATATGCTATTACAGACTTCAATGCTCCTGGCATTTCTACTGATGACCAGTGGCCTGCTGCTATTGATGCACAGCCTATTGCTGCAGCAACTGGTGTCAACTGGGCTGCTGCAGATGCTGCTGGAGAATGGGGTGAACCTGTGCAAGCTCCCCAAGCTCCCCAAGCTCCCGTCTCACAAATTCCTACTACCGGAATTGAGAATGTGCCTGCCACTGGCTGGGAATAA 915 0.4907 MAASTTTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQEEDEAPTAPEYAITDFNAPGISTDDQWPAAIDAQPIAAATGVNWAAADAAGEWGEPVQAPQAPQAPVSQIPTTGIENVPATGWE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0396 304 MobiDBLite consensus disorder prediction 282 296 - -
Lele11g0396 304 FunFam 40S ribosomal protein SA 21 227 - -
Lele11g0396 304 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele11g0396 304 PANTHER 40S RIBOSOMAL PROTEIN SA 12 281 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lele11g0396 304 Pfam Ribosomal protein S2 123 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 MobiDBLite consensus disorder prediction 274 304 - -
Lele11g0396 304 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lele11g0396 304 Hamap 40S ribosomal protein SA [rps-0]. 9 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lele11g0396 304 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lele11g0396 304 Gene3D - 21 226 - -
Lele11g0396 304 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0396 Lele-ChrLele11 3821280 3823577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0396 6 250 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 82.449 1.17e-150 422