Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0392 ATGATGCAAGGAAGTGGACAAATAGCAGTGCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTTTACTATTATCTCAGGAAGAAAGTCTCTTTTGAAGCCATTGACCTCGATGTCATCCGTGAAGTTGATCTCAACAAACTTGAGCCTTGGGATCTCAAAGAGAAATGTAGGATTGGATCAGGACCTCAGAATGATTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACCGGAACGCGAACGAACCGGGCAACGACGGCCGGATTCTGGAAAGCAACGGGGAGGGACAAGGCCATATACCTGAGCAACTCCAAGAGGATAGGGATGAGGAAAACCCTAGTCTTCTACACTGGCCGCGCTCCTCAGGGCCAAAAGACTGACTGGATCATGCATGAGTACCGCCTCGACCAAGACGATGCTGATCAGCTTCAGGAAGATGGCTGGGTGGTATGCAGGGTTTTCAAGAAGAAGAACTTTAACAGAGGGTTTCAACCAGAAATGGAAGAAGATGAGCAGATAATGAGTCACATGGAGTCAACAAGTACTGCTTCTAATAATAATTGCATGAAGGTTCTTGAACCATTAAAACACCGCCCTCACCTTCATCATCATCATCATCAAGGACTTGTTCAACCTTATTATGATGATGGCCAACATAATAATAATCATAGTAACTATGATAATAATAATAATTATTATAGTAGCTGCTTTAATGCCTCAATGCACCTACCACAGTTGTTCAGCCCAGAATCTGCAGTACAACCCTTTCCTTCTGCAACCTCTTCTTCGCCATTTTCGACGTCCACGATGAACCCGATGGAAGTCCTTCACTGTTCTCACAACCTACTTAGGCTCGCTTCATCAACTTCTCCTCCTCCTCCTGGAGGATTCATTAGTAATCTCATTCAGCAACAAGGTGATCAGAGACTCAATAATGGAGACTGGTCGTTCTTGGACAAGCTATTAGCTTCACAACAACAACATCAACCTGATGTGGTCCCTCCTATGGGGGCTTCTCCTCCTCCTGCTTCTTCTTCCCACAAGTTCCCTTTTCGTTACCTCGCTTGTGATCAGAGTGACATCATGAAGTAA 1104 0.4547 MMQGSGQIAVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLSNSKRIGMRKTLVFYTGRAPQGQKTDWIMHEYRLDQDDADQLQEDGWVVCRVFKKKNFNRGFQPEMEEDEQIMSHMESTSTASNNNCMKVLEPLKHRPHLHHHHHQGLVQPYYDDGQHNNNHSNYDNNNNYYSSCFNASMHLPQLFSPESAVQPFPSATSSSPFSTSTMNPMEVLHCSHNLLRLASSTSPPPPGGFISNLIQQQGDQRLNNGDWSFLDKLLASQQQHQPDVVPPMGASPPPASSSHKFPFRYLACDQSDIMK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0392 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 226 - -
Lele11g0392 367 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Lele11g0392 367 MobiDBLite consensus disorder prediction 330 350 - -
Lele11g0392 367 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Lele11g0392 367 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Lele11g0392 367 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Lele11g0392 367 FunFam NAC domain-containing protein 19 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0392 Lele-ChrLele11 3780582 3781894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0392 2 328 NAC Transcription Factor Family AT1G79580 56.677 9.63e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele11g0392 NAM 1.3e-37 No_clan