Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele11g0390 | ATGAAAAGCCAAAATGATCCCATAACAGCTATGCATGTTGCAAAGCTTAAGCAGCATCATGGTAGTGAGATTCTGATGTTGAGCTCACTTTCACTTTTGGGTCTGGGATTGTTCACTGATGCTTTCTTCTTCTTCTTCTTGCTTCCTTGTCTTCAGGGAACTCCAGTGAACATAATCGTTGGATCACATGTCTGGGTTGAGGATCCTGAGATTGCTTGGACTGATGGTGAGGTCACAGCAATCAATGGCAGCGACGCTACCATCCTTACTACACATGGAAAAACCATTGTTGCCAGCGTTTCTAGTATATATCCTAAAGATACAGAGGCACCACCAGCTGGAGTTGATGATATGACCAAGTTAGCATACCTTCATGAGCCAGGAGTACTGCATAATCTTTCCATTCGTTTCTCTCTCAATGAGATATACACATATACAGGGAACATCTTAATAGCAGTAAATCCTTTCCGGAGACTGCCACACTTGTATGACATACATATGATGGAGCAGTATAAAGGAGCAGCATTTGGAGAGCTAAGCCCTCACCTTTTTGCTGTTGCAGACACTTGTTACAGGGCAATGATTAATGAAAATGGAAGCCAGTCCATTTTGGTGAGTGGAGAGAGTGGTGCTGGTAAGACAGAGACAACAAAAATGCTAATGAGATATCTAGCTTTCATGGGAGGTAGATCTAATACTGAAGGAAGAACAGTAGAACAACAGGTTTTAGAGTCCAATCCAGTGTTGGAAGCATTTGGGAATGCCAAAACTGTCAAAAATAACAATTCAAGTCGTTTTGGTAAATTTGTTGAAATACAATTTGACAAGAATGGAAAGATTTCTGGCGCTGCTATCCGTACTTACCTCCTCGAAAGATCGCGAGTTTGCCAAGTTTCTGACCCAGAGAGGAACTATCACTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATGTCAAAAAGTACAAGTTGGGGGATCCTAGGAAATTTCACTACCTTAATCAATCAAACTGCTATGAAGTAGCAAATGTGGATGATGCAAAGGAATATCTGGAGACCAGAAATGCAATGGATATCGTAGGAATCAGCCAGGATGAGCAGGACGCTATTTTCCGCGTGGTATCCGCAATCCTCCATCTCGGTAACATCGACTTCATCAAAGGAAACGAAGTTGATTCTTCCAAAGTAAAGGATGAGAAATCAATCTTCCACCTTCACACTGTTGCAGAACTGCTCATGTGTGATGAGAAAGCATTAGAAGACTCGCTTTGCAAGCGTGTGATTGTTACTCCTGATGGTAACATCACGAAGCCACTAGATCCTGACTCTGCTGCTTTAAGTCGCGATGCTTTGGCGAAGACCGTGTATTCGAGGCTGTTTGATTGGATTGTGGACAAGATAAACAGTTCAATTGGACAAGATCCCAATGCAACAAGCTTAATAGGAGTCCTTGATATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTGTGTATCAATCTGACAAATGAGAAGCTGCAACAACATTTTAACCAGCATGTATTTAAGATGGAGCAAGAAGAATACACAAAGGAAGAGATCAACTGGAGCTACGTAGAATTTGTAGATAATCAAGATGTTCTTGATCTTATTGAAAAGAAACCTGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATGTTCCCCAAGTCAACCCATGAGACATTTGCCCAAAAATTGTATCAGACGTATAAAGCACACAAGCGTTTTAGCAAGCCCAAACTTGCTAGAACAGATTTCACAATTAACCATTATGCTGGAGATGTCATATACCAAGCAGATCAGTTTCTTGATAAAAATAAAGATTATGTTGTAGCAGAACATCAAGCGCTTTTAAACGCCTCCAAGAACTCATTTGTTGCAAATCTTTTCCCTCCATTACCTGAGGAGTCATCAAAGCAATCGAAATTCTCTTCCATCGGTACGCGGTTCAAGCAACAACTACAATCTCTGATGGACACATTGAACACAACAGAACCACACTACATCAGATGTGTGAAACCAAACACAGTTTTGCAGCCTGGAATATTTGAGAACTTCAATGTCTTAAACCAGTTGAGATGCGGGGGAGTACTCGAGGCAATACGGATTAGTTGTGCTGGATATCCAACAAAACGAACATATGATGAGTTCCTTGATCGTTTTGGAATGCTAGCCCCTGATGTCCTTGATGGATCTGACGAGAAAACAGCATGTGTTGCAATATGTGATAAGATGGGATTAAAAGGCTATCAAATGGGAAAAACGAAGGTATTTCTGAGAGCTGGGCAGATGGCTGAATTAGATGCAAGAAGAGCTGAAGTCTTAGCCAGAGCTGCTAGATGCATACAGAGACAAATCCGAACACACTTGACCAGAAAAGAGTTCCTCACCCTCAGAAAGGCCACAATTCATATCCAAAAATTATGGAGAGCAAGACTTGCACGTAACCTTTATGAGCAAATGCGGAGGGAAGCGGCTTCGATCCGAATACAGAAACATGCACGTGCACACACTGCAAGAATGCATTACACATCATTGCAAGCATCTGCAATAGTTATCCAGTCAGGTTTAAGAGCAATGGCAGCACGAAATGAATTCAGGTACAGACGAAGAACAAAGGCTGCAATCGAAGTTCAGACACAATGGAGAAGTTTCGACGCTTTTTCTGCTTACAAAAAGCTCAAGAAGGCAACTATTTCTCTTCAATGTCTCTGGAGAGCCAAAGTAGCTAGGAAGGAGCTCAGGAAGCTAAGGATGGCTGCAAGGGAAACGGGGGCACTTAAGGAGGCGAAGGACAAGTTGGAGAAGCGTGTTGAAGAGCTTACATGGCGACTTGATATCGAAAAGCACTTGAGGATTGATCTTGAGGAAGCTAAAGGGCAAGAAATTGCAAAGTTACAGAATGCATTACAAGAAATGCAAAGTCAGCTTGATGAAGCTCATGTTGCAATTATACACGAGAAGGAAGCAGCTAAACTAGCTATTGAATCTGCTCCACCAGTCATCAAAGAGGTACCTGTCGTCGACAATACCAAGCTCGAGCTACTGACAAGTAAAAATGTGGGGCTAGAGAGTGAAGTAGAAGAGCTGAAGAAGAAGATTGAAGAGTTTGAGGTAAGGTGTTCAGACATGGAAAAAGAGTCTCAAGAAAGGATGAAAGAGGCTGAAGAAGCACATTTGAAGGCAACACAACTTCAGGAGACTATTGAAAGATTAGAGTCGAATTTGTCAAACCTTGAGTCTGAGAATCAAGTTCTACGCCAGCAGGCTTTGGTCGAATCAAAAAATGAGGAACTCTCCGAGGAGCTTAAAACCCTCAAGGAGAAGATTGCAAGTCTAGAATCAGAGAATGAAAATCTTCGGAGCCGGCCACCAGCTGCTGTGGTGCAAAAGGTTTATCCAGAAAAAGTAGAAAAAGAAGAGCATCAGGAAACTGTTATTACAGAGAAAATTCAACAGAATGCTATTTCAGATACAATAAATTCACAAGTCAAGAATTTGGATAATGGAAACCTCACAGCTGAAGAACACCAAACAAGAAAAGAACCAAGACAACCAGTCTCCTTCCTTATAAGACAAAGATCGCTCACAGACAGGCAACAGGAAAGTCATGATGCACTGCTCAAGTGTCTTGCAGAGGATAAGAGATTTGAGAAAAATAGACCAGTTTCAGCTTGTGTTATCTATAAAGCGCTTCTTCAATGGCGATCCTTTGAAGCAGAGAAGACACATATATTTGATAAAATTATTCATACAATCCGATCATCTATTGAGAGTCAAGAAGGAATCAATGACCTAGCATATTGGCTCTCTACAACTTCAACATTATTGTTTTTCCTACAAAGCACACTCAAGGCCAGCAACTCAACCAAGGCAGCGTCTCGTAGCAATCGAAACTCCCCTGCTACTTTATTTGGCAGAATGGCACAAGGCTTGCTTTCATCCTCCATGGGCATGGGGGTTTCAAGTGGCTACAGTGGAATGGTGGGAAAGCCAAATGAGCAATCAAAAGTGGAAGCAAAGTATCCAGCTATTCTATTCAAGCAACATTTAACTGCATATGTTGAGAAGATTTATGGAATGATCCGTGACAGTTTAAAGAAAGAGATCAGTCCATTCCTAAATTTGTGCATTCAGGCACCAAGATCTATGAGGACTAAATCGGTACGAGGATCATCGAGGAACATCCACTCAAATATAGTTGCAAAACAACAGGCATCAAATATGCACTGGAAAAGCATTGTCAATAAGTTAGACCATACCTTGGGCATATTGTCTGACAACTATGTTCCTTCCATGATTACAAGGAAGATCTTTAGTCAGGTGTTCTCTTTCATGAATGTCCAGCTTTTCAATAGTTTATTGCTTCGCCGCGAGTGCTGCTCCTTTAGCAATGGAGAGTATTTAAAGGCAGGTTTGCATGAGTTGGAACAATGGTGTATCAAGGCAACTGATCAGTTTGCTGGATCTTCTTGGGATGAACTCAAACACATACGGCAAGCTGTAGGCTTTCTGGTCTCGCATCAAAAGACACAAAAATCTTTAGATGAGATAACAAGTGAATTATGTCCGGTGTTGAGTATCCCACAGATTTATCGTATTGGAACTATGTTCTGGGATGACAAATATGGAGCACAGGGCTTATCTCAAGAAGTAATTAGCAGAATGAGAGTGCTTGTGGCAGAAGACTCCATAAACATACCCAATAACTCCTTCCTTCTGGAGGTGGATTCCAGTATACCTTTCTCAATGGAGGAGATGTTCCGTTCCATGACTGACATCCGATTATCGGACATCGATGTGGATCCACCCCCAATCCTAAGACAAAGATCCGACTTCCAATTCTTATTGCAGCAAGTGGATGGCGAGTCTCGTTGA | 4908 | 0.4171 | MKSQNDPITAMHVAKLKQHHGSEILMLSSLSLLGLGLFTDAFFFFFLLPCLQGTPVNIIVGSHVWVEDPEIAWTDGEVTAINGSDATILTTHGKTIVASVSSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLSIRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRKFHYLNQSNCYEVANVDDAKEYLETRNAMDIVGISQDEQDAIFRVVSAILHLGNIDFIKGNEVDSSKVKDEKSIFHLHTVAELLMCDEKALEDSLCKRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNATSLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTYKAHKRFSKPKLARTDFTINHYAGDVIYQADQFLDKNKDYVVAEHQALLNASKNSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQSLMDTLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTYDEFLDRFGMLAPDVLDGSDEKTACVAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLARAARCIQRQIRTHLTRKEFLTLRKATIHIQKLWRARLARNLYEQMRREAASIRIQKHARAHTARMHYTSLQASAIVIQSGLRAMAARNEFRYRRRTKAAIEVQTQWRSFDAFSAYKKLKKATISLQCLWRAKVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHLRIDLEEAKGQEIAKLQNALQEMQSQLDEAHVAIIHEKEAAKLAIESAPPVIKEVPVVDNTKLELLTSKNVGLESEVEELKKKIEEFEVRCSDMEKESQERMKEAEEAHLKATQLQETIERLESNLSNLESENQVLRQQALVESKNEELSEELKTLKEKIASLESENENLRSRPPAAVVQKVYPEKVEKEEHQETVITEKIQQNAISDTINSQVKNLDNGNLTAEEHQTRKEPRQPVSFLIRQRSLTDRQQESHDALLKCLAEDKRFEKNRPVSACVIYKALLQWRSFEAEKTHIFDKIIHTIRSSIESQEGINDLAYWLSTTSTLLFFLQSTLKASNSTKAASRSNRNSPATLFGRMAQGLLSSSMGMGVSSGYSGMVGKPNEQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSMRTKSVRGSSRNIHSNIVAKQQASNMHWKSIVNKLDHTLGILSDNYVPSMITRKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELEQWCIKATDQFAGSSWDELKHIRQAVGFLVSHQKTQKSLDEITSELCPVLSIPQIYRIGTMFWDDKYGAQGLSQEVISRMRVLVAEDSINIPNNSFLLEVDSSIPFSMEEMFRSMTDIRLSDIDVDPPPILRQRSDFQFLLQQVDGESR | 1635 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele11g0390 | 1635 | CDD | MYSc_Myo11 | 127 | 770 | IPR036018 | - | |
| Lele11g0390 | 1635 | FunFam | unconventional myosin-Va | 836 | 883 | - | - | |
| Lele11g0390 | 1635 | Pfam | IQ calmodulin-binding motif | 906 | 925 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Pfam | IQ calmodulin-binding motif | 787 | 805 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Pfam | IQ calmodulin-binding motif | 858 | 877 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Pfam | IQ calmodulin-binding motif | 809 | 828 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Pfam | IQ calmodulin-binding motif | 835 | 853 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | PRINTS | Myosin heavy chain signature | 143 | 162 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | PRINTS | Myosin heavy chain signature | 480 | 508 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | PRINTS | Myosin heavy chain signature | 533 | 561 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | PRINTS | Myosin heavy chain signature | 247 | 274 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | PRINTS | Myosin heavy chain signature | 200 | 225 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 880 | 902 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 784 | 806 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 903 | 925 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 832 | 854 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 807 | 829 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SMART | iq_5 | 855 | 877 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Gene3D | Kinesin motor domain | 116 | 713 | IPR036961 | - | |
| Lele11g0390 | 1635 | Pfam | Myosin N-terminal SH3-like domain | 60 | 100 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | Pfam | Myosin head (motor domain) | 115 | 770 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 59 | 108 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 833 | 859 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 904 | 933 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Gene3D | - | 783 | 834 | - | - | |
| Lele11g0390 | 1635 | Gene3D | - | 835 | 883 | - | - | |
| Lele11g0390 | 1635 | Gene3D | - | 884 | 932 | - | - | |
| Lele11g0390 | 1635 | FunFam | Class V myosin | 490 | 639 | - | - | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 856 | 885 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Pfam | DIL domain | 1448 | 1551 | IPR002710 | - | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 881 | 910 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Coils | Coil | 1023 | 1057 | - | - | |
| Lele11g0390 | 1635 | FunFam | Myosin heavy chain | 303 | 358 | - | - | |
| Lele11g0390 | 1635 | Coils | Coil | 927 | 961 | - | - | |
| Lele11g0390 | 1635 | ProSiteProfiles | Myosin motor domain profile. | 113 | 782 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | CDD | MyosinXI_CBD | 1208 | 1595 | IPR037975 | GO:0007015 | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 808 | 837 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | Coils | Coil | 966 | 993 | - | - | |
| Lele11g0390 | 1635 | ProSiteProfiles | IQ motif profile. | 785 | 812 | IPR000048 | GO:0005515 | |
| Lele11g0390 | 1635 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 87 | 836 | IPR027417 | - | |
| Lele11g0390 | 1635 | SMART | DIL_2 | 1447 | 1554 | IPR002710 | - | |
| Lele11g0390 | 1635 | PANTHER | MYOSIN | 105 | 1560 | - | - | |
| Lele11g0390 | 1635 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 363 | 652 | - | - | |
| Lele11g0390 | 1635 | Gene3D | - | 303 | 361 | - | - | |
| Lele11g0390 | 1635 | Gene3D | - | 718 | 780 | - | - | |
| Lele11g0390 | 1635 | FunFam | Myosin 2 | 363 | 478 | - | - | |
| Lele11g0390 | 1635 | Gene3D | - | 490 | 674 | - | - | |
| Lele11g0390 | 1635 | FunFam | unconventional myosin-Va | 787 | 835 | - | - | |
| Lele11g0390 | 1635 | SMART | MYSc_2a | 107 | 783 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Lele11g0390 | 1635 | Coils | Coil | 1065 | 1133 | - | - | |
| Lele11g0390 | 1635 | FunFam | unconventional myosin-Va | 884 | 931 | - | - | |
| Lele11g0390 | 1635 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 836 | 933 | IPR027417 | - | |
| Lele11g0390 | 1635 | ProSiteProfiles | Dilute domain profile. | 1257 | 1572 | IPR002710 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele11g0390 | Lele-ChrLele11 | 3759647 | 3770617 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele11g0390 | 167 | 1628 | Myosins gene family | AT2G31900 | 75.051 | 0.0 | 2280 |