Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0379 ATGTCCTCCGCCACCGACAGCGACACTACCGTCGTGCCAGAGACGATGGAAGCAGAAATGAAGACGTACTGGTGTCACGAATGCGATATGAGTGTTGCTCTGTCAAGCCCTTCTTCGTCTTCAACTTCGTCGTCGACTCTTCTCTGCCCTCATTGCCACACCCACTTCCTCGAACTCATGGACTCCCCTTTCTTCCCTCAATCAGATTCTCATTCATTTCCCGCCTCGCTTTCCTCCTTCGACACCCCCTACCTCCACCACTTAATCCAGAACCACCTCCTTCCCTCGGACGACGACGACGACGACGACGACGACGACGGTGAGCTTTTGTACGACGACGTTTTCGAGGACCCGTTATCTCTGCTATTCACACTACCAAATACCACCACCAAATCTTGCACTGATTCTGTACCCACTATAATAGTTACCTCTTCCTTGCTTTCGCAGCTTGACCCTGGAGGGGTTCTTTGTGCGGTTTGTAAGGACCCAATTGGGGTTGATGCGCAGGCTAAGCAGCTTCCGTGTAAGCATTTGTACCACTCCGATTGCATTACGCCGTGGCTGGAGCACCACAATTCTTGCCCGCTTTGTCGTTTTCAGCTGGTCGGGGAACAGGAGGAGGATGATGGGGTTTCTCAGGCGAGAAGGATCAGAAGGCAGTTGAGAACAGCCATGATGAGGCTGTCTGAATTGATGGAAGAGGAGGAGGATTTCTACGGGTTGAGGACCACTCTGAGTCACATTGCTAGTAGACACCTCGTTATTTCTTCTGCTATTTCGGGTCATAGGAATGATGAGAACCCTTCTGATTCCATGGCTTCCCCTCTGATGGCGGAAGCAGATTCTGTATCTGCTGGCAGCAATGCTAATTCGGAGCATGAGTTGTTTATTGAAATGATTGAAGCTGGTGATGGAAGTCATAACCAATTCAGCATTAGTCAAGTATAG 948 0.5021 MSSATDSDTTVVPETMEAEMKTYWCHECDMSVALSSPSSSSTSSSTLLCPHCHTHFLELMDSPFFPQSDSHSFPASLSSFDTPYLHHLIQNHLLPSDDDDDDDDDDGELLYDDVFEDPLSLLFTLPNTTTKSCTDSVPTIIVTSSLLSQLDPGGVLCAVCKDPIGVDAQAKQLPCKHLYHSDCITPWLEHHNSCPLCRFQLVGEQEEDDGVSQARRIRRQLRTAMMRLSELMEEEEDFYGLRTTLSHIASRHLVISSAISGHRNDENPSDSMASPLMAEADSVSAGSNANSEHELFIEMIEAGDGSHNQFSISQV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0379 315 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Lele11g0379 315 SUPERFAMILY RING/U-box 156 201 - -
Lele11g0379 315 Pfam zinc-ribbon 22 60 IPR039525 GO:0061630
Lele11g0379 315 SMART ring_2 157 197 IPR001841 -
Lele11g0379 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 215 IPR013083 -
Lele11g0379 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 201 - -
Lele11g0379 315 Pfam Ring finger domain 157 198 IPR001841 -
Lele11g0379 315 Coils Coil 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0379 Lele-ChrLele11 3679909 3682524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0379 17 218 C3H Transcription Factor Family AT3G60080 37.815 1.02e-31 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0388 09 2696175 2697034 Lele11g0379 11 3679909 3682524 hybridization
Lele10g0362 10 2432160 2433792 Lele11g0379 11 3679909 3682524 hybridization