Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0374 ATGGATCTTGATTTGAACGAGGAGCCCTTTGACCAAACCCCTACTTCAGTTATTGGATTTGATTCTATATTGGATGAGCTAGAATCAACGCATGAACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAACCTTGAGAGCTAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAACGTTATCACAGATATGATGATGACACCTAGTGCTCATGATGAACACAGGATGCTCCAAGAAGATGTTGGTGTCGCAGTCCCTGAAGGAACAGTTGTATTAGCGGAATTGACAACAACTAACACTCAAAATGAAGGTAGCTTGCCCAGGGAAGAGGCTGGTGTAGACCAAGAAAGAACAGTCAACAATAGGAAAACGGGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGATGAAGTGAGCAACACTGGGAATTTTTTTGATTGTAACATCTGTCTGGACTTGGCAAGGGATCCGATTTTGACTTGCTGTGGTCACTTATTCTGTTGGCCATGCTTCTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTATTTGTAAGGGAGAGGTTGCTGAAACAGGCATTATTCCAATATATGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAATTGAAAGAAAGTGGTTTCACCATCCCTCCTCGGCCTCAAGCGCGTAGAATTGAGAGTCTCAGACAACAGCTCATAAGCAGGGGAGCATCATCTTCTACAATCCATGAGATTAGGCGATTTATTGGTTCAACTGCAACTGATAGAGCACGTTTTTCAGTCAACGAACCTCACCATTCGCAGCCCCAAGCATCACATGGCATGGAGACCGGAACCAGGCAGCATAATCGTTCACGTCTGCTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTCTCATCCCTTTCGTCAGCATTAAATTCTGCAATGGATTCAGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCGTCCCCAACAACCTCAATCCATAGGAAGCCCTAGAGAGCTGCTAGATCCTCTTTCTCTTAATAGAGATTCACCTTCTATCATTGCTGCGACAAACCAATCACAGAGACATATTCCAGCTGTTGCTGCCAATGCTTCTTTTCCTCCTTTACGTATGAATGTTGATGCAACTGCAGTAATAGATTCGGGTATCCAGACAACAGATAACGGTGTACAAATTAATGCAACAGAGCCTTCTTCATCCTCTAGCAGAACTGTTGTGATAGGACTTCCAGACCTTTATGATAGAGTTTCAAATGGGCGCAGAAGGAGAAGGTTAAGAAGATGA 1356 0.4336 MDLDLNEEPFDQTPTSVIGFDSILDELESTHEHIEERIRQLEAVTLRARQRQRWRRGHDSVQINNVITDMMMTPSAHDEHRMLQEDVGVAVPEGTVVLAELTTTNTQNEGSLPREEAGVDQERTVNNRKTGKRNSSHLVAKALGMDPYIDDEVSNTGNFFDCNICLDLARDPILTCCGHLFCWPCFYQVSYAYSNVRECPICKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQARRIESLRQQLISRGASSSTIHEIRRFIGSTATDRARFSVNEPHHSQPQASHGMETGTRQHNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIRPQQPQSIGSPRELLDPLSLNRDSPSIIAATNQSQRHIPAVAANASFPPLRMNVDATAVIDSGIQTTDNGVQINATEPSSSSSRTVVIGLPDLYDRVSNGRRRRRLRR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0374 451 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lele11g0374 451 SUPERFAMILY RING/U-box 152 211 - -
Lele11g0374 451 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 122 302 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele11g0374 451 Coils Coil 24 44 - -
Lele11g0374 451 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
Lele11g0374 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 216 IPR013083 -
Lele11g0374 451 CDD RING-HC_AtRMA_like 160 204 - -
Lele11g0374 451 SMART ring_2 162 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0374 Lele-ChrLele11 3662128 3663483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0374 116 268 C3H Transcription Factor Family AT3G58030 42.857 4.02e-33 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0383 09 2674775 2676127 Lele11g0374 11 3662128 3663483 hybridization
Lele10g0357 10 2408294 2409175 Lele11g0374 11 3662128 3663483 hybridization