LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele11g0366	ATGACTACGGTTTCCTCGTCTAAGGTGCTGGAGAGCCGAGGAGCGGGATATTTTGATGGGCAACAGGTTTTATTGATCTTCAGGGATATATGCAATGCAGTTTTCGCAATGCATTGTCAATCCCCACCGATTGCTGACCGAGACTTAAAAGCTGAAAATCTTCTATTAGCTTCGTATGGCTTGTGGAAATTGTGTGACTTTGGAAGCACATCCACCAATCATAAGCGTTTTGAGAAACCAGAAGAAATGTGGATTGAGGAAGATAATATCAGAAAGTTCACAACTCCTGTCTATAGGGCACCTGAGGCTCTTGGGTGTCTTCTCTTTCGCATATGCTACTTCAGGAGTGCATTTGATGGAGAATCCAAGCTTCATGTTCTTAATGGAAGCTATCGCATCCCCGATTTACCTAAGTATAGTTCATCCATTGTAGACTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGGCAAGAAATCACGCAGGCAAGCGCTTTGCTTGATTGGACATTCATCTCAATGAATTTAGATGCTTCAAAGCCTGCTAACAGATCAACCTCAGTGCCTCGTAGGACTTCATCACAGTCATCCCTTTCTTCTAGGGGAGGTGGAGGTGGGGGCCAGCTTGGTGCTTTCTGTTCCACTCAGCATGCACAAAAATCACTTGCCACAAAAGGAAGGAGCAAACCCATATTTGATGAAGAACGAGCTAGCAATCCTATTTCATCAAAACTTGATAGAATTCGTCCAGAGAATAATCAATTACCTAATAATATTAGCCCTAACAAAGTGGTCAATGCCCAATCCCAAACTTTGAAAAGCATTTCACATGGAAAATCAAACAAGCCTGATACTGGTTCTTCCAACGACTTTGAAATAAAACTTTTTCAGGGTCAAGATCATAGTACTGAGAAGCGAATGTCATCAAAAATAGAAAACACAACTACTTTTAAAGACCAGGCTTTTAACGCTTTTGTTGCTGAATTTGATACTAGTAAATTCAACTCTGGACCCAGTCATAAATCTGGTAGGGAAGCAGCATTAGAGTCTGAGGTGGAGAAACTCAAGGAGCAGCTGAACGAAGTTAACTTGGAAAAAGCCGAAATAACTTCCAGGTATGAAAAGCTCACTACCATCTGCCGATCTCAAAGACAAGAACTCCAAGATCTCAAGCTGGCACTTGGAGCTAAAACTTCATCACCAAATCAGGAGGCTCTTAGAACACCTTCAACAGTTGCAACATCTACTGCTATGAGATGTGGGACAGTTCAGGAACAAGCACAAAGTATAGCTGGATGGAAAACTCCTGGCTCAGAACCTAAGTCATCATGGCAAGCTTTTCCAGAGGAACCCCTGCCACAGAGGTCTGTTCCGCGAAACAATCAGCCTGCCCAGCCAACTAGTAATTTTAATTCTTGGGCGTTTGGAGCAGAAAGCTTTTCTTCTATCCATATGGGAAACCCACAAATGCCTAGGCATACTACTGATGGGAGTAATTCTAAGGCTAAGTCTACCTATGAGAGAAAGTCAGCTTCTCAACCTGGTGGATGGGCTGGTTTTTAA	1566	0.4272	MTTVSSSKVLESRGAGYFDGQQVLLIFRDICNAVFAMHCQSPPIADRDLKAENLLLASYGLWKLCDFGSTSTNHKRFEKPEEMWIEEDNIRKFTTPVYRAPEALGCLLFRICYFRSAFDGESKLHVLNGSYRIPDLPKYSSSIVDLIRDMLQARPDDRQEITQASALLDWTFISMNLDASKPANRSTSVPRRTSSQSSLSSRGGGGGGQLGAFCSTQHAQKSLATKGRSKPIFDEERASNPISSKLDRIRPENNQLPNNISPNKVVNAQSQTLKSISHGKSNKPDTGSSNDFEIKLFQGQDHSTEKRMSSKIENTTTFKDQAFNAFVAEFDTSKFNSGPSHKSGREAALESEVEKLKEQLNEVNLEKAEITSRYEKLTTICRSQRQELQDLKLALGAKTSSPNQEALRTPSTVATSTAMRCGTVQEQAQSIAGWKTPGSEPKSSWQAFPEEPLPQRSVPRNNQPAQPTSNFNSWAFGAESFSSIHMGNPQMPRHTTDGSNSKAKSTYERKSASQPGGWAGF	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele11g0366	521	Coils	Coil	346	394	-	-
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	181	264	-	-
	Lele11g0366	521	Pfam	Protein kinase domain	15	164	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0366	521	Gene3D	Transferase(Phosphotransferase) domain 1	3	187	-	-
	Lele11g0366	521	PANTHER	SERINE/THREONINE PROTEIN KINASE	8	514	-	-
	Lele11g0366	521	SMART	serkin_6	1	171	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	246	264	-	-
	Lele11g0366	521	SUPERFAMILY	Protein kinase-like (PK-like)	10	170	IPR011009	-
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	456	512	-	-
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	181	204	-	-
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	228	243	-	-
	Lele11g0366	521	ProSiteProfiles	Protein kinase domain profile.	1	173	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele11g0366	521	MobiDBLite	consensus disorder prediction	430	521	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele11g0366	Lele-ChrLele11	3605778	3610192	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele11g0366	18	163	MAP Kinase Kinase Kinase	AT5G11850	23.494	3.23e-06	48.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Lele11g0366		Pkinase	5.9e-11	CL0016