Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele11g0355 ATGGTTCGCTCCAATGGCGTAAGGCTGATTCGATGGGGTGCTCGTCGATCTCTTGCCTCAAACTACCTTCGTGAAGAAGCGAACAACATACACGACGCAGTGTCCCAAAGAGGTTATAGGACATTGAATTCAGGGGTTTGCAGGCCATCTAGGATTATTGGAAGTTACCCTTCAAATGCTTCGTTGGCAAGAGATTATTATGATGTTCTTGGTGTGAATAAGAATGCAAGCGCAGCTGAAATAAAGAAAGCATATTATGGGCTTGCAAAGAGGCTCCATCCTGACACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCGATAGCATATGAGGTTTTGAAGGATGAGGAAAAGCGGCAACAATATGATCAGGTTGGCCATAATGCCTATGTAAATCAACAAAGCAATGGTTTTGGAGGAGATGCTGGCTTTAATCCATTTGAGCAGATATTCCGTAATCATGATTTTGTAAAGGACTTTTTTCATCAAAATGTTGGTGGAGAGGACGTCAAGACCTTTGTTGAACTATCATTTATGGAAGCTGTTCAAGGATGCACCAAAACTGTGTCATTTCAAACTGATGTGCTTTGTAATGCCTGTGGTGGTAGTGGCGTTCCTCCTGGAACAAGACCTGAAACTTGCAAACGCTGTAAAGGGTCTGGTGTGAATTATGTACAAGCTGGCATATTCAGGATGGAGAGTACCTGCACCGCATGCAAGGGAACTGGAAAAATTGTATCTAGCTTCTGCAAGTCTTGCAGGGGTGCAAAGGTTGTCAAAGGAACAAAGTCAGTCAAGTTGGATTTCACCCCTGGGATAGACAACAATGAGACTATAAAAGTTTATAGAAGTGGTGGAGCAGACCCTGACGGAGATCACCCAGGTGATCTTTACGTGATTGTCAGGGTTAGAGAAGACCCTGTTTTCCGAAGAGAAGGATCTGATATTCATGTGGATGCTGTCTTAAGCATTACTCAGGCAATTTTGGGGGGCACCATTCAGGTCCCCACTCTTACAGGAGATGTTGTTCTCAAGGTTCGTCCTGGCACCCAACCCGGTCAGAAGGTGGTATTGAAAAAGAAAGGTATCAAAACCAAAAATTCGTGGTCGTTTGGGGATCAATTTGTTCATTTTAATGTCAGCATCCCAACAAACCTGACGCAGAGACAGCGTGAATTAATCGAGGAGTTTGCCAAGGAAGAGCAAGGAGAAGATGTTAAACAGAGAGCTGCTTCGGGTTCTGGATGA 1260 0.4381 MVRSNGVRLIRWGARRSLASNYLREEANNIHDAVSQRGYRTLNSGVCRPSRIIGSYPSNASLARDYYDVLGVNKNASAAEIKKAYYGLAKRLHPDTNKDDPEAEKKFQEVSIAYEVLKDEEKRQQYDQVGHNAYVNQQSNGFGGDAGFNPFEQIFRNHDFVKDFFHQNVGGEDVKTFVELSFMEAVQGCTKTVSFQTDVLCNACGGSGVPPGTRPETCKRCKGSGVNYVQAGIFRMESTCTACKGTGKIVSSFCKSCRGAKVVKGTKSVKLDFTPGIDNNETIKVYRSGGADPDGDHPGDLYVIVRVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKNSWSFGDQFVHFNVSIPTNLTQRQRELIEEFAKEEQGEDVKQRAASGSG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele11g0355 419 FunFam Molecular chaperone DnaJ 193 266 - -
Lele11g0355 419 Gene3D DnaJ domain 62 174 IPR036869 -
Lele11g0355 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 188 264 IPR036410 -
Lele11g0355 419 Pfam DnaJ C terminal domain 177 387 IPR002939 -
Lele11g0355 419 Gene3D - 308 416 - -
Lele11g0355 419 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 412 - -
Lele11g0355 419 FunFam Chaperone protein dnaJ GFA2, mitochondrial 62 173 - -
Lele11g0355 419 Hamap Chaperone protein DnaJ [dnaJ]. 62 413 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele11g0355 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 312 398 IPR008971 GO:0006457|GO:0051082
Lele11g0355 419 CDD DnaJ 65 119 IPR001623 -
Lele11g0355 419 Pfam DnaJ central domain 201 261 IPR001305 GO:0031072|GO:0051082
Lele11g0355 419 ProSiteProfiles dnaJ domain profile. 65 130 IPR001623 -
Lele11g0355 419 FunFam Chaperone protein dnaJ 1, mitochondrial 308 414 - -
Lele11g0355 419 SMART dnaj_3 64 122 IPR001623 -
Lele11g0355 419 CDD DnaJ_zf 201 261 IPR001305 GO:0031072|GO:0051082
Lele11g0355 419 SUPERFAMILY Chaperone J-domain 64 165 IPR036869 -
Lele11g0355 419 Pfam DnaJ domain 65 127 IPR001623 -
Lele11g0355 419 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Lele11g0355 419 ProSiteProfiles Zinc finger CR-type profile. 188 266 IPR001305 GO:0031072|GO:0051082
Lele11g0355 419 PRINTS DnaJ domain signature 85 100 IPR001623 -
Lele11g0355 419 PRINTS DnaJ domain signature 122 141 IPR001623 -
Lele11g0355 419 PRINTS DnaJ domain signature 102 122 IPR001623 -
Lele11g0355 419 PRINTS DnaJ domain signature 67 85 IPR001623 -
Lele11g0355 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 173 308 IPR008971 GO:0006457|GO:0051082
Lele11g0355 419 CDD DnaJ_C 172 390 - -
Lele11g0355 419 Gene3D - 175 303 - -
Lele11g0355 419 Gene3D - 201 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele11g0355 Lele-ChrLele11 3545193 3550159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele11g0355 65 129 Miscellaneous Gene Families AT1G16680 40.299 7.00e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0355 11 3545193 3550159 Lele11g0355 11 3545193 3550159 ECH
Lele09g0357 09 2535300 2540137 Lele11g0355 11 3545193 3550159 hybridization
Lele10g0337 10 2281589 2286776 Lele11g0355 11 3545193 3550159 hybridization